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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTGACATTCTGAAGACTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAGgttaagattaaccttttttttgtgttaactagattcactataattttgtgagtgcaccatgtgctattcagcattatatatttattccatcgctctctgcttcgttcttgttatctgattcttctgctgtaaatttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g47350.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g47350.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G415846_T01 (Zea mays), 5'ss of exon 9
GAGTTTGACATTCTGAAGACTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAGgttaagattaaccttttttttgtgttaactagattcactataattttgtgagtgcaccatgtgctattcagcattatatatttattccatcgctctctgcttcgttcttgttatctgattcttctgctgtaaattt-gcag
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GAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAGgttaaggattaaccttttctcctctaaagtagactcacaatgttt-----agtac-ctaagttgtatt----------------ttcagttgctttctgcctcaccctcttggattgacacatttattttgacttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681086|gb|CB677361.1|CB677361
EST:     CTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAG                         TTTATCATGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGCCTTGAA
genomic: CTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAGgttaagatta ... aaatttgcagTTTATCATGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGCCTTGAA
EST: gi|29628119|gb|CB633130.1|CB633130
EST:     CTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAG                         TTTATCATGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGTCTTGAA
genomic: CTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAGgttaagatta ... aaatttgcagTTTATCATGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGCCTTGAA
EST: gi|29689750|gb|CB686025.1|CB686025
EST:     CTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAG                         TTTATCATGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGCCTTGAA
genomic: CTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAGgttaagatta ... aaatttgcagTTTATCATGTTTTATGCCTGCTCACTGGATCCTGAAATCTGTGGCCTTGAA