1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGGGAAGCAGAATCCGCAAATCTTGCGGTTGATTCAGGAAAATCAGGCTGAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaaccaagagaactacaaaacatgtattatattctaattgatacacatacaatatttacattacattttatacgctctggtaaatcag
species | Oryza sativa |
transcript | LOC_Os06g15360.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|88834598|gb|CI077881.1|CI077881
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29643187|gb|CB648194.1|CB648194
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTCCAGTTACEST: gi|29657665|gb|CB653940.1|CB653940
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29669285|gb|CB665560.1|CB665560
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29643233|gb|CB648240.1|CB648240
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|300215820|gb|HO088446.1|HO088446
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGTGGCACTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACEST: gi|33654536|gb|CF277150.1|CF277150
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29662304|gb|CB658579.1|CB658579
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29660321|gb|CB656596.1|CB656596
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|87015278|gb|CI275468.1|CI275468
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|86494540|gb|CI137173.1|CI137173
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|86489922|gb|CI132555.1|CI132555
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29673855|gb|CB670130.1|CB670130
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29670072|gb|CB666347.1|CB666347
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|88830186|gb|CI076442.1|CI076442
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29630613|gb|CB635622.1|CB635622
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|2431315|gb|C73735.1|C73735
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTTATGCCACAGGCACTTACAGTTAEST: gi|300215841|gb|HO088467.1|HO088467
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCT-ATGCCACAGGCACTTACAGTTA
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGTGGCACTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|88220271|gb|CI219831.1|CI219831
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|87028194|gb|CI111888.1|CI111888
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|89197384|gb|CI010004.1|CI010004
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|14980837|gb|BI305515.1|BI305515
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|23514955|gb|BU673867.1|BU673867
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|89186903|gb|CI053306.1|CI053306
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|8859709|gb|AU097027.1|AU097027
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|218488797|gb|FG951622.1|FG951622
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGTGGCACTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|88245156|gb|CI245005.1|CI245005
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|33687246|gb|CF315485.1|CF315485
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|29631165|gb|CB636174.1|CB636174
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATATTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|87036144|gb|CI189591.1|CI189591
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|32947880|gb|BP184452.1|BP184452
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTACEST: gi|8527786|gb|AU092601.1|AU092601
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
EST: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGG AAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
genomic: GAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaacca ... ggtaaatcagAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACAGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGAAGCAGAATCCGCAAATCTTGCGGTTGATTCAGGAAAATCAGGCTGAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGCGGCGCTGCTGGGGGgtaagaaccaagagaactacaaaacatgtattatattctaattgatacacatacaatatttacattacattttatacgctctggtaaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT