1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGAAGTTGCAGCTATGCGTGTTGATAAGGAACAAGAAGTCAAAGCCAGGCGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttcaagtgctgaagagttttattgaatttgatatttttattaccgtcaagttcttaagggcacatttagaatgttggttgatcattagtagca...
species | Oryza sativa |
transcript | LOC_Os06g14080.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|86417773|gb|CI031982.1|CI031982
genomic: TAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|58656972|gb|CK045652.1|CK045652
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|88966695|gb|CI365918.1|CI365918
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: GAAGTTCTCAAGTGCTTTCTGTAAGG CC-GAGCTCATCACGAA-TGGGCTTACTCGCAACTACCAATGACAGC-GCEST: gi|218497247|gb|FG965663.1|FG965663
genomic: GAAGTTCTCAAGTGCTTTCTGGAA-Ggtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGC
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|117221070|gb|CT861424.1|CT861424
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|218491272|gb|FG950307.1|FG950307
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCANGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|27920796|gb|CB096604.1|CB096604
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCAEST: gi|87012894|gb|CI297121.1|CI297121
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
EST: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAG CCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
genomic: CGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttc ... ttcttgccagCCGGAGCTCATCACGAAGTGGGCTTACTCGCAACTACCAATGACAGCGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAGTTGCAGCTATGCGTGTTGATAAGGAACAAGAAGTCAAAGCCAGGCGGCTTGGTAGTTCTAAAGGGACTGGAAGTTCTCAAGTGCTTTCTGGAAGgtacatcttcaagtgctgaagagttttattgaatttgatatttttattaccgtcaagttcttaagggcacatttagaatgttggttgatcattagtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG