1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACGACACCAGTTCTTGTTGTTCTTCCTGTGTTGACGTTTTGGTTTTACAAGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtgacaggaagttttgtatactgaaatgtttgttttggtttggtggtaagagtgaaatttgttggatgtgcag
species | Oryza sativa |
transcript | LOC_Os05g51630.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|86538186|gb|CI178392.1|CI178392
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|29660844|gb|CB657119.1|CB657119
genomic: AGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|218481681|gb|FG962994.1|FG962994
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCCTTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACATCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|86835886|gb|CI346081.1|CI346081
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88474517|gb|CI411788.1|CI411788
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: TGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|29666876|gb|CB663151.1|CB663151
genomic: TGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88529999|gb|CI458362.1|CI458362
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: TTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88502300|gb|CI429806.1|CI429806
genomic: TTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|29678913|gb|CB675188.1|CB675188
genomic: AGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88501925|gb|CI429431.1|CI429431
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: TGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGGCAAGGGAGCCAACCTTCGAEST: gi|29627769|gb|CB632780.1|CB632780
genomic: TGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAAC-GGGCAAGGGAGCCAACCTTCGA
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88487157|gb|CI424428.1|CI424428
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: GCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88480824|gb|CI418095.1|CI418095
genomic: GCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: TTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|5607372|gb|AU076044.1|AU076044
genomic: TTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: GTACTGCAAGAACCGGTTTGAG-CTGCATTTGTGAGGAACCCANTTACAG GAANCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAEST: gi|88511172|gb|CI438678.1|CI438678
genomic: GTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCA-CTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGA
EST: ACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88524719|gb|CI453663.1|CI453663
genomic: ACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: TGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88482848|gb|CI420119.1|CI420119
genomic: TGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: ACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|88837473|gb|CI078833.1|CI078833
genomic: ACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATEST: gi|89185677|gb|CI047546.1|CI047546
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
EST: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAG GAAGCGATGAGGAAAGACACCNTGGAACGGGCAAGGGAGCCAACCTTCGAT
genomic: AGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtg ... ggatgtgcagGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGACACCAGTTCTTGTTGTTCTTCCTGTGTTGACGTTTTGGTTTTACAAGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGgtaatgtgtgacaggaagttttgtatactgaaatgtttgttttggtttggtggtaagagtgaaatttgttggatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC