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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgcagctacttgcgagaattttattgtgttaagttttaagtgattatgatgaactactaaattagcttgctttgtatgactatttagac...

Basic information

species Oryza sativa
transcript LOC_Os05g51630.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgcagctacttgcgagaattttattg-tgttaagttttaagtgattatgatgaactactaaattagcttgctttgtatgactatttagac
 || ||||| ||||||||||| |||||||  ||||| ||||| |||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||||||||| ||| |   | | |  ||   |||| |||    | ||| ||      | ||||     |||         |  |||||  ||||  |           
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaac---ggaacctctcttgagagtttaggggatgtcaaaccc--actgatc----tgagtctt---gtctgcttgtgttgttag-----------

upper sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA02G43910.1 (Glycine max), 5'ss of exon 10
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgca------gctacttgcgagaattttatt--gtgttaagtttta---agtgattatgat-----gaactactaaattagcttgctttgtatg-actatttagac------------------------------------------------------
 |||||||||||||||||||| |||||||| || ||||| ||  | ||||| | |||  | || ||||| ||  |||||||||| |||||||| || |||||||     |   ||      |     ||    |||   |||   | ||   |||||   | |||  ||        ||| |  |||    |  |  ||  |||| | |||| |  |                                                      
GTATTTCTTACTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagttagctcatgaaaggtcttctgtttcaatgcaatttaatctttgtttttacaaactgaccatagacacgagaaattttaaggatgaatatttactatgtattattcaatcttcaacaattgaatattttgttatgtagcataatgcctgaaatctaaatggcag

upper sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 9
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgcagctacttgcgagaattttattgtgttaagttttaag---tgattatgatgaactactaaatta-gcttgctttgtatg-actatttagac
|||||| ||||| ||||||||||||||||||||||||||  |  | |||||||||||| | || |||||  | ||||||||||| || | |||||| |||||||  |          |  ||   | |  || | | |     ||  | ||   ||| |      |  | || ||  | || |  |||  ||  | ||||     
ATATTTTTTACTGGGCCTTGTCTATGCTGTGGTGACACCAGTGCTACTTCCTTTCATAATTGTTTTCTTTTGCCTGGCATATGTCGTATTCCGCCATCAGgtaaaaagttgacattttgattataaaatcttaaatataaagggtaatcaggattgagtgcacaaacatcctcaagaatgcctattttcaatccaatatt-----

upper sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 9
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaagga--------ccactgcagctacttgcgagaattttattgtgttaagttttaagtgattatgatgaactact--aaattagcttgctttgta-tgactatttagac--------------------------------------------------------------------------------
 ||||||||||||||||| || ||||| ||||| || ||  | || |||||||||||| | |||||||||||  ||||||||||||| |  || || |||||||           ||    ||  |   ||   |||| |  |  |       |   | |     ||   |  |  |  | | ||   || |||  | |   |  || ||                                                                                 
CTATTTCTTACTTGGCCTCGTTTATGCCGTGGTCACCCCCATTTTACTTCCTTTCATAATAGTATTCTTCGGCTTGGCATATGTTGTATTTCGTCATCAGgtaaaagttggtattccttcacatttgtgtggaggaatctcctcctaccctaatcatattttccctgcccagttgttttacagtatagtgtttttcagttggtggttggaaaggaatctctgatgtaatatattatctctgtcctctctgcccaaattctttctctaataaaatttctggtggatatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29666920|gb|CB663195.1|CB663195
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|218481681|gb|FG962994.1|FG962994
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|29666876|gb|CB663151.1|CB663151
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|29627769|gb|CB632780.1|CB632780
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|58686140|gb|CK074827.1|CK074827
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|218492846|gb|FG945413.1|FG945413
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG