1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGCTGTTCTAGCACCTTCTCAAAAGGGTGAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagcgtttgagtttgtgttcattgcattgttagtcacaacatgcacctgcttttgtcattaattgagcctctgaattgcag
species | Oryza sativa |
transcript | LOC_Os05g51530.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88833079|gb|CI369969.1|CI369969
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|29621004|gb|CB626015.1|CB626015
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|22304801|gb|BQ906023.1|BQ906023
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: AAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|38476572|gb|CF960705.1|CF960705
genomic: -AAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|44674895|gb|CR288329.1|CR288329
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88832120|gb|CI014679.1|CI014679
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88838776|gb|CI376314.1|CI376314
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|89169855|gb|CI110214.1|CI110214
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86412678|gb|CI067083.1|CI067083
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88993179|gb|CI108807.1|CI108807
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGACAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88762888|gb|CI772444.1|CI772444
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|89167979|gb|CI109183.1|CI109183
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: AGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGCCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGTTCTGGGAGGTGAEST: gi|89194148|gb|CI116585.1|CI116585
genomic: AGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|29674593|gb|CB670868.1|CB670868
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|66930240|gb|CX117088.1|CX117088
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GGAGCAT-CTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|25802832|gb|CA758793.1|CA758793
genomic: GGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAANAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|29674594|gb|CB670869.1|CB670869
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|89184153|gb|CI046718.1|CI046718
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86867024|gb|CI343848.1|CI343848
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: TAAGGACCATCCT-GAGGAACTCTGTGGCAATGTCCATAG TATTTAGTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86602685|gb|CI357049.1|CI357049
genomic: TAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86420087|gb|CI054888.1|CI054888
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|38565596|gb|CK085049.1|CK085049
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86488603|gb|CI131236.1|CI131236
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAACGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|89169875|gb|CI110234.1|CI110234
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: AGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|29613963|gb|CB618976.1|CB618976
genomic: AGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|58654927|gb|CK043607.1|CK043607
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|58666296|gb|CK054982.1|CK054982
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|58590593|gb|CF988901.1|CF988901
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86864092|gb|CI332974.1|CI332974
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|29612870|gb|CB617883.1|CB617883
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88843269|gb|CI372169.1|CI372169
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: AAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAACCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86822271|gb|CI357878.1|CI357878
genomic: AAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|86599127|gb|CI355744.1|CI355744
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAEST: gi|88270309|gb|CI385567.1|CI385567
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGTAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCTGTTCTAGCACCTTCTCAAAAGGGTGAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagcgtttgagtttgtgttcattgcattgttagtcacaacatgcacctgcttttgtcattaattgagcctctgaattgcag
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA