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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAGCTTACGGACGGGTTGACCCAGACGGTTCGCGCTATTTACTTGGTGATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAGgtaccagctatgcactgttttgaaactaaaagactcttgatccatttctcagtactcacaaatattcccttttgatgtactggttacttttttaag

Basic information

species Oryza sativa
transcript LOC_Os05g51480.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 10
TAAGAGCTTACGGACGGGTTGACCCAGACGGTTCGCGCTATTTACTTGGTGATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAGgtaccagct-atgcactgttttgaaactaaaagactcttgatccatttctcagtactcacaaatattcccttttgatgtactggttacttttttaag
| |||||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | || || |||||||||||||||||||||||||||||||| ||||| |||||  |||| | |||||||||  |||| ||||||      |  | | || ||     | |  |||||||   |  | |             
TCAGAGCTTATGGACGGGTTGACCCAGATGGTTCTCGATATTTACTCGGTGATAATACTGGAATTTTGCATTTACTTGTCCTTACCCATGAACGAGAAAGgtaacagcttgtgcattattttgaaacagaaaggctcttg-----ctaatgattattct---gtttcaccttttgtcattttag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86904800|gb|CI310593.1|CI310593
EST:     GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAG                         GGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
genomic: GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAGgtaccagcta ... cttttttaagGGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
EST: gi|2309742|gb|C25897.1|C25897
EST:     GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAG                         GGTAACCGNTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
genomic: GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAGgtaccagcta ... cttttttaagGGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
EST: gi|29669278|gb|CB665553.1|CB665553
EST:     GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAG                         GGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
genomic: GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAGgtaccagcta ... cttttttaagGGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
EST: gi|86894503|gb|CI308252.1|CI308252
EST:     GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAG                         GGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC
genomic: GATAATGCAGGCATATTGCATTTACTTGTCCTTACCCATGAACGAGAGAGgtaccagcta ... cttttttaagGGTAACCGGTCTGAAAATCGAGTACTTGGGAGAGACTTCAATTGCATCATC