1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaactagcaagttgttttagccattgctcccatgaagtttatgtttgtttgtaccacttgcttgttaacacattttttctgttgatatgcag
species | Oryza sativa |
transcript | LOC_Os05g50980.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGAEST: gi|38481283|gb|CF965372.1|CF965372
genomic: AGATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
EST: AGATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAGATCATCGATGCATTGGAEST: gi|86890247|gb|CI321424.1|CI321424
genomic: AGATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
EST: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGAEST: gi|86868384|gb|CI334172.1|CI334172
genomic: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
EST: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGAEST: gi|88978149|gb|CI384631.1|CI384631
genomic: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
EST: ATTCTAGATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGEST: gi|38470611|gb|CF954742.1|CF954742
genomic: ATTCTAGATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACC-GGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGG
EST: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGAEST: gi|88223679|gb|CI223528.1|CI223528
genomic: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
EST: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGAEST: gi|86504726|gb|CI147359.1|CI147359
genomic: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
EST: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAA ATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
genomic: ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaac ... tgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTGATGGACATATCAGAAGAACACGTGAAATCGCAATCAAgtatgtgaactagcaagttgttttagccattgctcccatgaagtttatgtttgtttgtaccacttgcttgttaacacattttttctgttgatatgcag
- - GATGGA
- - - - - - - - - AAGAAC