1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGCATTAGCAAACCGCTCATGAGTGCTCGGAGCTTGTTGAAGAGTGAAAGCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtagtatctcattcctgcaccacacatgtcaggacggttcctgtttgtcgaggaaggaaacaatatatgttctagtctatctaattttttatttacgtaagatttaaaataaaattttgacataagatagtctatttctcag
species | Oryza sativa |
transcript | LOC_Os05g50120.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAACATGGACGAAACAGCTGATGAGGTCTCGEST: gi|86825380|gb|CI360027.1|CI360027
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGGTGAGGTCTCAEST: gi|88250359|gb|CI348589.1|CI348589
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: AGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCAEST: gi|88252268|gb|CI350696.1|CI350696
genomic: AGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCAEST: gi|33680007|gb|CF308246.1|CF308246
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCAEST: gi|86477826|gb|CI120459.1|CI120459
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCCAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCAEST: gi|33680006|gb|CF308245.1|CF308245
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCAEST: gi|88251680|gb|CI350108.1|CI350108
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: CCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCAEST: gi|88224790|gb|CI224639.1|CI224639
genomic: CCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
EST: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGAT CAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
genomic: GCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtag ... tatttctcagCAGGAGGATTCCCTTACAGAGAGCATGGACGAAACAGCTGATGAGGTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCATTAGCAAACCGCTCATGAGTGCTCGGAGCTTGTTGAAGAGTGAAAGCATAAGCGCTTCCAAGTGTATTGGTGAAAAACCAAAGCAAGACAGAGATgtaagtgtagtatctcattcctgcaccacacatgtcaggacggttcctgtttgtcgaggaaggaaacaatatatgttctagtctatctaattttttatttacgtaagatttaaaataaaattttgacataagatagtctatttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA