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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag

Basic information

species Oryza sativa
transcript LOC_Os05g44360.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 10
GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag
||| |||| ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| || || |  |  | |        ||    | |   ||  ||| |  ||    ||| || |  |     |||||    | ||  |  |   |||   || |                                                                             
GTTGTACTTGGAACGCTTCTGGCAGCATTAGTACCGGTGGTTGGTTTTAATGCAGTAATGACCTCTGAGCACTTCGCATCATTTCTGgtatctatataccctctccttgatttttctccattccgcagtacaatatcatt--gccagctcttgcaaatgttttgcttcttgaggctggacttcca---aatt-----------------------------------------------------------------------------

upper sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 10
GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataa-ataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag
||| || |||||||| |  |||| ||||| || || |||||||| |||||||| || ||||| || ||||| |||||||||||||||||   | |   |  | | || || |     ||            ||||||| | |   |||| |   ||| |   |    | ||||  ||| || |  | || |     | || |                                                                    
GTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAATGCTGTAATGACATCAGAGCATTTTGCATCATTTCTGgtgagttc-ccccctagtttttggatgaagtt------------aattttcctta--aagataagggaccaagagtatgtt-ttagcctaatattattattgcataccttttcttg-------------------------------------------------------------------

upper sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 10
GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag
||| || |||||||| |  |||| ||||| || || |||||||| |||||||| || ||||| || ||||| |||||||||||||||||   |     | |||  || || |     ||  ||  |  |  ||  |   | |   ||| ||      || |||  |||| ||  || | |     |   || || |||                                                                       
GTTGTATTGGGAACATTGTTGGCTGCCTTGGTGCCTGTGGTTGGGTTTAATGCTGTAATGACATCAGAGCATTTTGCATCATTTCTGgtgagtttcccccttg-tttttgaattaagttgatttttccttaaagataagtgaccaagagca------cattttagcctaatattattatt-----gcacaccttttctt----------------------------------------------------------------------

upper sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 10
GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccct-attagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag
||| |  |||||||| |  | ||||| || || || || |||||||| |||||||| ||||| || || || |||||||||||||||||   | |  |    ||   |||      | || ||  ||||    || | | |||| |  | ||  |     || |   | || ||||    |     | |   ||                                                                            
GTTGTGTTGGGAACATTGTTAGCAGCTTTGGTGCCTGTTGTTGGTTTCAATGCAGTAATGACATCAGAACATTTTGCATCATTTCTGgtgagttctgtag--ggaccatga-----tattgttatttgttctgttgtgtccatttattttatccattggtttagttttcatcagaaagtgtgtatggcgttgtt----------------------------------------------------------------------------

upper sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 10
lower sequence: EFJ15189 (Selaginella moellendorffii), 5'ss of exon 10
GTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGgtatatacattcattggctt--atgcac-accttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcag
|||||||| |||||||||||||| ||||| || || || ||||| || || || || |||||||||||||| ||||| || ||  ||||| |||| ||    |   |  | |||  || || || |   | |                                                                                                                                            
GTTATACTCGGAACACTTCTGGCCGCCTTGGTTCCTGTTGTTGGCTTCAACGCTGTTATGACGTCTGAGCATTTTGCGTCCTTCTTGgtacatacttttgccgaacttgacgcatgacattgtcgttactatcag-----------------------------------------------------------------------------------------------------------------------------------------