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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACACAGATCCTGCTGTTGTACAAATTGCATTTCAGTATAGTGTTATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAGgtatgcaggattttggcattccttagtttaccgttaagttagtctgttccatgcctaattggcctcctttctggccgaacatgccaagcctcttgtgcta...

Basic information

species Oryza sativa
transcript LOC_Os05g37120.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37120.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 10
GCACACAGATCCTGCTGTTGTACAAATTGCATTTCAGTATAGTGTTATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAGgtatgcaggattttggcattccttagtttaccgttaagttagtctgttccatgccta--attggcctcctttctggccgaacatgccaagcctcttgtgcta
|||||||||||||||||||||||| ||||| |||||||| || || ||||||||||||||| | |||||||  |||| | ||||| ||||| |||||||   ||         ||| ||| ||| |  |||||   ||| | || ||| |||   ||   | |   |||  |   |       |     ||   ||  
GCACACAGATCCTGCTGTTGTACAGATTGCTTTTCAGTACAGCGTGATTGAACCTGTCAAGGAAACATCAGGCAATGGATCACAACCATCTGCAAGgtacatagagacaataaattgctttgtt-atagttaa-caagtgtcttgcattccttgcatatacatgtgttcatgttcagtggaaaagatagctcaagcag

upper sequence: LOC_Os05g37120.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G106140_T01 (Zea mays), 5'ss of exon 10
GCACACAGATCCTGCTGTTGTACAAATTGCATTTCAGTATAGTGTTATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAGgtatgcaggattttggcattccttagtttaccgttaagttagtctgttccatgcctaattggcctcctttctggccgaacatgccaagcctcttgtgcta--
||| ||||||||||||||||| || || || |||||||| || || |||||||||| |||| | |||||||   ||| | ||||||||||| |||||||   ||      |  ||| |||   |||  |||||   ||  | || |||||||    |      |  ||       ||||   ||              
GCATACAGATCCTGCTGTTGTGCAGATCGCTTTTCAGTACAGCGTGATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagagacaagaaattgcttt-cttatagttaa-caagcatcttgcatgccttgcagttactatacctttgtattcatgttcagtggaaaagatagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27577326|gb|CB000021.1|CB000021
EST:     ATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAG                         TAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCG
genomic: ATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAGgtatgcagga ... catcctacagTAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCG
EST: gi|27577801|gb|CB000496.1|CB000496
EST:     ATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAG                         TAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCG
genomic: ATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAGgtatgcagga ... catcctacagTAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCG
EST: gi|29616493|gb|CB621505.1|CB621505
EST:     ATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAG                         TAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCG
genomic: ATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCATCTACAAGgtatgcagga ... catcctacagTAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCG