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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAGgttagagtgtgcttatgttctttttgttatcacatcacttgtttcatggacccatttttgctctgaaactaaatagagaattttattatttgaaaattattgaag

Basic information

species Oryza sativa
transcript LOC_Os05g36120.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36120.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G070113_T01 (Zea mays), 5'ss of exon 10
GGATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAGgttagagtgtgcttatgttctttttgttatcacatcacttgtttcatggacccatttttgctctgaaactaaatagagaattttat-tatttgaaaattattgaag
 ||||||||||| |||||||| ||||||||||| || || ||||||||||||||| | |  ||      | ||| |  |||      ||||| ||   ||  |   ||  | || |||| |||| |      |||| | | ||| ||| ||| || ||
AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggttg-----atacttatgctta------cactttttgactgaccattttgattctgtgaagctaactgtgtggttttctattttttaaacttactggag

upper sequence: LOC_Os05g36120.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G052926_T02 (Zea mays), 5'ss of exon 10
GGATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAGgttagagtgtgcttatgttctttttgttatcacatcacttgtttcatggacccatttttgctctg--aaactaaatagagaatttta--ttatttgaaaattattgaag---
 ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| | |  || |  |  | |||            ||||| || | |||||| |||||   ||||  || |||||  | || |||    || ||| |||   || | ||   
AGATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggttgatactagtgttta-----------cactttttgcctggacc-attttgattctgtaaagctaaactgtgattttctgtttttttcaaacccatcggagcag

upper sequence: LOC_Os05g36120.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G070113_T04 (Zea mays), 5'ss of exon 9
GGATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAGgttagagtgtgcttatgttctttttgttatcacatcacttgtttcatggacccatttttgctctgaaactaaatagagaattttat-tatttgaaaattattgaag---
 ||||||||||| |||||||| ||||||||||| || || ||||||||||||||| | |  ||      | ||| |  |||      ||||| ||   ||  |   ||  | || |||| |||| |      |||| | | ||| ||| ||| || ||   
AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggttg-----atacttatgctta------cactttttgactgaccattttgattctgtgaagctaactgtgtggttttctattttttaaacttactggagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218480114|gb|FG963249.1|FG963249
EST:     ATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAG                         CA--A-GGCTATCCAGATCCAGGTGGTCTTTATGCCTTCCAACAACCAGGA
genomic: ATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAGgttagagtgt ... attattgaagCAGCAAGGCTATCCAGATCCAGGTGGTCTTTATGCCTTCCAACAACCAGGA
EST: gi|125863408|gb|EL586699.1|EL586699
EST:     ATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAG                         CAGCAAGGCTATCCAGATCCAGGTGGTCTTTATGCCTTCCAACAACCAGGA
genomic: ATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAGgttagagtgt ... attattgaagCAGCAAGGCTATCCAGATCCAGGTGGTCTTTATGCCTTCCAACAACCAGGA