1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaatttttcctttcgcctgctgatggtggtgggtgcactggggttgtgattgaacttggtggctggtgatggcag
species | Oryza sativa |
transcript | LOC_Os05g29860.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|29675292|gb|CB671567.1|CB671567
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|33653632|gb|CF276246.1|CF276246
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|86535315|gb|CI175521.1|CI175521
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|66915672|gb|CX102520.1|CX102520
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTTTTCEST: gi|33683403|gb|CF311642.1|CF311642
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|88974714|gb|CI023010.1|CI023010
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|86893712|gb|CI314811.1|CI314811
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: ACAATCCTGAGGGAGGAA-GACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|88956821|gb|CI009049.1|CI009049
genomic: ACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|33686569|gb|CF314808.1|CF314808
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|88977074|gb|CI024811.1|CI024811
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTCEST: gi|88901491|gb|CI008919.1|CI008919
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
EST: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG GGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
genomic: GCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaat ... gtgatggcagGGGATCGAGCCGCGGGTGCTGTGGATTGGCATCGGCGGGTCCATCTTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAGgtagcaaaatttttcctttcgcctgctgatggtggtgggtgcactggggttgtgattgaacttggtggctggtgatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG