1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACGgcaagtgataaattcttcacttttaggaatcctgtgtttaactatttcatcctaaaactttcagtgatcttttgataatcctttaatggactacag
species | Oryza sativa |
transcript | LOC_Os05g29010.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACG ATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGTEST: gi|3759043|gb|C96742.1|C96742
genomic: CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACGgcaagtgata ... tggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT
EST: TTTGGGNTGAGCTCAATGCAGCCTGGTCCTCCGTACTGATNCTGAAAACG ATTGGGAAAGAACCATCTCTTGAAAAATCTATCAGGTTTTTTCAGGGCATCEST: gi|10930605|gb|AU160879.1|AU160879
genomic: TTTGGG-TGAGCTCAATGCAG-CTGGT-CTTCGTACTGATTCTGAAAACGgcaagtgata ... tggactacagATTGGGAAAGAA-CATCTCTTGAAAAATCTATCAGG-TTTTTCAGGGCATC
EST: CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACG ATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT
genomic: CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACGgcaagtgata ... tggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACGgcaagtgataaattcttcacttttaggaatcctgtgtttaactatttcatcctaaaactttcagtgatcttttgataatcctttaatggactacag
- - - - - AGCTCA
- - - - - - - - - GCAGCT
- - - - - - - - - CAGCTG