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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGGgtatatcttcatacgattacttttcttgtaacagtgtatgcttttcatgatcattgaccgtctttcgtgattttctagctagggattgctattgtaaatg...

Basic information

species Oryza sativa
transcript LOC_Os05g28200.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28200.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 10
GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGGgtatatcttc-----atacgattacttttct-tgtaacagtgtatgcttttcatgatcattgaccgtctttcgtgattttctagctagggattgctattgtaaatg
||||||||||||||| ||||||||||| ||||| || |||||  ||||| ||||| ||||||| |||||||||||||||| || ||     || |  || | ||||  | | |   |  || | | ||||||| ||||||| | || | ||||| | |||                      
GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtctccacatcctgttccatttcggtttgatcattcatacatgtcatgatgattgacctttttacttgattatgtag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86907178|gb|CI292792.1|CI292792
EST:     CCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGG                         TCACTCCCGGTTGCTTTTGGTATGGAAAC
genomic: CCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGGgtatatcttc ... cttttttcagTCACTCCCGGTTGCTTTTGGTATGGAAAC