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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaaatttccttcacttctgttggacgaaaaacttgaattttcatgttcccttgctagccgcgttagctgatcagaaaattgcgtgattttcag

Basic information

species Oryza sativa
transcript LOC_Os05g28180.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28180.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G416667_T01 (Zea mays), 5'ss of exon 18
GCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaaatttccttcacttctgttggacgaaaaacttgaattttcatgttcccttgct----agccgcgttagctgatcagaaaattgcgtgattttcag
|| ||||||||||| |||||||| | ||||||||||||| | || || |||||||| | ||| ||||| || |||||||||||||| ||||| ||  |||||  ||  | | |  |   | | | |||       || | | |||||  ||    ||  ||    | | |       | |||||                   
GCGCACTGGATTGGTAAGAACTACTTCAAAAGAGGACCTGCTGGAAATGATATTCACAGAACCAATGTACCGCACATCAGGGTTCAATTTAGAGAGATGgtataaa--attctgttctccctttattgtcttggcaagtggtattttggtgaaatctgactcttaaactgttcccctttatcag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675538|gb|CB671813.1|CB671813
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|58670237|gb|CK058923.1|CK058923
EST:     TTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: TTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|88833424|gb|CI076905.1|CI076905
EST:     AAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: AAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|88906221|gb|CI375293.1|CI375293
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTTTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|89198377|gb|CI007437.1|CI007437
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|88964769|gb|CI084767.1|CI084767
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTAAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|27548799|gb|CA767547.2|CA767547
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|29638453|gb|CB643462.1|CB643462
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|86481338|gb|CI123971.1|CI123971
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|88842057|gb|CI081313.1|CI081313
EST:     TGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: TGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|29637475|gb|CB642484.1|CB642484
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|88841548|gb|CI080804.1|CI080804
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|86536752|gb|CI176958.1|CI176958
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
EST: gi|87022773|gb|CI269709.1|CI269709
EST:     ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTG                         ATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT
genomic: ATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGgtacgaacaa ... tgattttcagATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGTCATCTTACCT