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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgtttctcataattcacaggtgttaataggcttgtagctgtgtccgaattctaaaagtcatgtaaatgctaaatt...

Basic information

species Oryza sativa
transcript LOC_Os05g11140.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgtttctcataattcacaggtgttaataggcttgtagctgtgtccgaattctaaaagtcatgta--aatgctaaatt---------------------------------------------------------------------
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||   |     ||||| || ||| | ||  |  ||   |  |   |    ||||  |||  |       | ||||   |  ||    | || | | ||                                                                     
TGATGAAGAACCAAACTATGCAAAGTACATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAATACAGATGGTGCTCAAAAGgtattgttctat---ccaaccttgttgctccttgttcttgttaactaa-agcttgcttccagccattgtttggtactaaggcttctgggccattggttatttgtaccagtacacatctgcatacaatgattggtatagatactaatatatgcttttatgattttctaccag

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgttt-ctcataattcacaggtgttaataggcttgtagctgtgtccgaattctaaaagtcatgtaaatgctaaatt
||||||||||||||| |||||||| |  || || ||||| ||||| ||||| || ||||| ||||| || |||||||| |||||||| |||||||||||||||||  |||   |    | |||    ||| ||  || | |  |  | || | || |   |  ||||| | |   | |    |   | | | |    |   
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGATATCAGGCCAATAAACACTGAAGGTGCTCAGAAGgtacttaattctattattattttaaaatttgcttttattgcttacatatttaaagtc---tgactgtgactgccctttttttgggttattattctgtag--

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgtttctcataattcacaggtgttaataggcttgtagctgtgtccg-aattctaaaagtcatgtaaatgctaaatt
||||||||| || ||||||||||| | ||||||||| |||||||| |||||||| || |||||||| || || ||||| || || || || || || ||||||    |||  || | | |  | |    |    |  ||   |   ||| | | | ||||||    || |   |   |   | |  |||     || ||  
TGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGCCCTAACCCAGATATTAGACCAATTAATACAGAAGGGGCACAAAAGgtatca-att--ttgctatccctttatacttgtgttttttttatacgttca-aagattgtagtaaagttcttgacattgctaattttgttttgtctgaag-

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgttt-ctcataattcacaggtgttaataggcttgtagctgtgtccgaattctaaaagtcatgtaaatgctaaatt
||||||||||||||| |||||||  |  || || ||||| ||||| ||||| || ||||| ||||| || |||||||| |||||||| |||||||||||||||||  |||   |    | |||    ||| ||  || | |  |  | || | || ||    | |   | |   || |    || || ||     ||    
TGATGAAGAACCAAATTATGCAAGATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGATATCAGGCCAATAAACACTGAAGGTGCTCAGAAGgtacttaattctattattattttaaaatttgcttttattgcttacatatttaaagtctgactgttac-tgccctttttttgggttat-tattctgtag---

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttac-caacttt----cttgtttctcataattcacaggtgttaataggcttgtagctgt-gtccgaattctaaaagtcatgtaaatgctaaatt
||||||||||||||| |||||||| |  || || ||||| ||||| ||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||  | |||| |    |||||     ||| || | ||   | |||  | || | || ||    | ||| | ||   ||       | ||      |       
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtact-taatgctaatattactttagaatttgctttttattgcttaca--tattgaaagtctgactgttgttgcccttgtttgggctattattctgtag-------

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgtttctcata-attcacaggtgttaataggcttgtagctg--tgtccgaa--ttctaaaagtcatgtaaatgctaaatt
|||||| || ||  | ||||| || |   | || ||||||||||| || || || |||||||||||||| |||||||| || ||||| ||||| ||||||||  |    || |      |||  || |    |||| ||| |    |  || |  |||     |||  ||||  ||  || |    ||        ||  ||   
TGATGAGGAGCCTGATTATGCTAAATATGTCTCCCTTTTTGATGGAATAGTCGGCCCAAACCCAGACATTAGGCCAATAAATACTGAGGGTGCACAGAAGgtgatttggtgat------cttctttatgaaacatatattgaggtttactatttagctccggtctgaatgtctaaagttttttcgtgtttgtctggtgtgaag--

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgta-ctgca------ttgcttaccaactttcttgtttctcataattcac---aggtgttaataggcttgtagctgtgtccgaattctaaa-agtcatgtaaatgctaaatt-------------
|||||||||||| || |||||||| |  ||||| || |||||||| ||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||| || |       ||||||     |  | |  |   |||| ||| |      ||  | ||  | || | | |         |||| ||  |  || ||| |  ||   |             
TGATGAAGAACCTAATTATGCAAAATATATTTCCCTCTTTGATGGGATTGTAGGTCCAAACCCAGATATCAGGCCAATTAACACAGATGGTGCTCAGAAGgtaactactatgctcttgcttctaggccgtgtgatggttcattattgagctggagttcttatttgtttattgtttaacagactttctgaatggagatctaatttatactctttttcttgtgaag

upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 10
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttct-tgtttctcataattcacaggtgttaataggcttgtagctgtgtccgaattctaaaagtcatgtaaatgctaaatt
|||||||||||| || |||||||| |  || || || |||||||| ||||| |||||||| || || || |||||||| |||||||||||||||||||||||||  ||||  |    | || ||| |  |    || | |  |   |   | | |||||     ||  ||  |  | ||    | |  ||  ||  ||   
TGATGAAGAACCTAATTATGCAAAATATATCTCCCTCTTTGATGGGATTGTGGGTCCAAATCCGGATATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacc-catttatgtttatctgtctgtactgaatatgaatttcttttcacatttggctttggagtgcatctaacatgta---tttacctat-tgtgaag--