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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTCATCAAGCAGGAGTTCTCAGGGTGCACTGTGATCACCATAGCTCACAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaactggccctgaaagaatcactatcattcttcagagaaatgcttaccttgaagtgatgcagcaaatggatcatgaatactctcttcttttgaatgaattctgtgtgatctttgtctggtatttcag

Basic information

species Oryza sativa
transcript LOC_Os05g10730.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g10730.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 11
AGAGTCATCAAGCAGGAGTTCTCAGGGTGCACTGTGATCACCATAGCTCACAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaactggccctgaaagaatcactatcattcttcagagaaatgcttaccttgaagtgatgcagcaaatggatcatgaatactctcttcttttgaatgaattctgtgtgatctttgtctggtatttcag
||| | |||| |||||| ||||||   || || ||||| ||  |||||||||| ||||| || ||||  |||||||||||||||||||| || || || |||| | || |   ||          |||       ||  | | | ||  |   |||  |  ||  ||| |     |||| || |||   |  |||       ||| |||                       
AGAATTATCAGGCAGGAATTCTCAAACTGTACAGTGATTACAGTAGCTCACAGAGTTCCAACAGTCATGGACAGTGACATGGTCATGGTCCTCTCTTATGgtatgaaattattcc----------actccgcagatttggggtactgggt--tttgttgatattgagccagctt-tcataaacactggttggttt------gattttgtag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22306197|gb|BQ907419.1|BQ907419
EST:     CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACG                         GGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
genomic: CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaact ... ggtatttcagGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
EST: gi|88905796|gb|CI002134.1|CI002134
EST:     CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACG                         GGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
genomic: CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaact ... ggtatttcagGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
EST: gi|88227935|gb|CI227415.1|CI227415
EST:     CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACG                         GGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
genomic: CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaact ... ggtatttcagGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
EST: gi|58690372|gb|CK079059.1|CK079059
EST:     CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACG                         GGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
genomic: CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaact ... ggtatttcagGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
EST: gi|87015086|gb|CI273484.1|CI273484
EST:     CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACG                         GGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
genomic: CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaact ... ggtatttcagGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
EST: gi|29679770|gb|CB676045.1|CB676045
EST:     CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACG                         GGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT
genomic: CAGGGTTCCCACTGTCACTGACAGTGACATGGTCATGGTTCTTTCATACGgtaagcaact ... ggtatttcagGGAAACTCATAGAGTATGATAGGCCATCAAGGCTGATGGAGAATGAGGACT