1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGgttagtagtaacattgagagatggtggcaccacaagttgattctcaatcctgattttcctacccaaaaaatgctcaaggcaattgcacttaaaatatttg...
species | Oryza sativa |
transcript | LOC_Os05g08980.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG GGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAATEST: gi|88833806|gb|CI077287.1|CI077287
genomic: AAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGgttagtagta ... tgcttttcagGGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAAT
EST: ATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG GGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAATEST: gi|218505037|gb|FG952955.1|FG952955
genomic: ATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGgttagtagta ... tgcttttcagGGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAAT
EST: AAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG GGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAATEST: gi|86485840|gb|CI128473.1|CI128473
genomic: AAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGgttagtagta ... tgcttttcagGGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAAT
EST: AAGGCTCAAAAATGTCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAG GGNTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAAT
genomic: AAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGgttagtagta ... tgcttttcagGGGTTGCAACTGGCCATAGAAACAGGGAATTTTGACAAGGAAACGTTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGgttagtagtaacattgagagatggtggcaccacaagttgattctcaatcctgattttcctacccaaaaaatgctcaaggcaattgcacttaaaatatttg
- - - - - - - - - - - - - - TGGAAG