Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTGgtaagttcaatttccttctgtcacattggtaagatctagatactaattggcagagatttggctatcctatttgatattcctgtatgttattctattttaa...

Basic information

species Oryza sativa
transcript LOC_Os05g03430.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03430.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G455664_T01 (Zea mays), 5'ss of exon 10
GTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTGgtaagttcaatttccttctgtcacattggtaagatctagatactaattgg-cagagatttg-gctat--cctatttgatattcctgtatgttattctattttaa
||||| ||||||||||| |||| || ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| | | |   | |||| |  ||||| ||||||||| ||  |||| |||| ||||  | |||  ||| |||  |     ||   |         |    
GTATTCCTGTACGAGTAATGACCAGGCCTGGTTCTCAGTTACTAGGGATAAATGGACGTGATGATGGGCCACTGgtaagtttattcttactttgtctcgctggtaggatctagatgcttgttggacagacatttatggtattacctctttatttgatttggtggcggcggcggt----

upper sequence: LOC_Os05g03430.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G155123_T01 (Zea mays), 5'ss of exon 10
GTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTGgtaagttcaatttccttctgtcacattggtaagatctagatactaattggcagagatttgg--ctatc-ctatttgatattcctgtatgttattctattttaa
||||| ||||||||||| |||| || || |||||||| ||||||||||||||||| ||||||||||| |||||||| |||| | | |   | |||| || ||||| ||||||||||||  ||||   | ||||||  ||| | |||||| || ||   |  ||    | | |   ||
GTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAAATGGGCGGGATGATGGGCCACTGgtgagtttattcttactttgtcccactggtaggatctagatactggttgg---acatttggtactacctctatttcattttttggggtgggggtgtctaacaa