1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTGGAAGGGCATACGTCTCAGATCAGCCAGCACTATTATGGTTGTCTTTTCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatgacttgtctcttattcttaatctcacgcatccttatggtgatcttggatatgtaatggcagaaaccagctacttcttaatttatgaattggt...
species | Oryza sativa |
transcript | LOC_Os05g01470.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAA AGACTGTCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCAEST: gi|33798829|gb|CF325271.1|CF325271
genomic: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatga ... tctttttcagAGACTGCCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCA
EST: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAA AGACTGCCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCAEST: gi|58658577|gb|CK047257.1|CK047257
genomic: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatga ... tctttttcagAGACTGCCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCA
EST: CCATGAGCTACTGGCAGTGTCAAATTGCTGATCGGCATCCACAACAAGAA AGACTGCCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCAEST: gi|33675097|gb|CF303336.1|CF303336
genomic: CCATGAGCTACTGGCA-TTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatga ... tctttttcagAGACTGCCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCA
EST: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAA AGACTGCCTGCAGAAGTGATACCTCEST: gi|58609748|gb|CK037781.1|CK037781
genomic: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatga ... tctttttcagAGACTGCCTGCAGAAGTGATACCTC
EST: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAA AGACTGCCTGCAGAAGTGATACCTCAGAAGATGEST: gi|11442586|gb|BF430489.1|BF430489
genomic: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatga ... tctttttcagAGACTGCCTGCAGAAGTGATACCTCAGAAGATG
EST: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAA AGACTGCCTGCAGAAGTGATACCTCAAAAGATGATAGGATTTTCAAGTTCA
genomic: TCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatga ... tctttttcagAGACTGCCTGCAGAAGTGATACCTCAGAAGATGATAGGATTTTCAAGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGAAGGGCATACGTCTCAGATCAGCCAGCACTATTATGGTTGTCTTTTCCATGAGCTACTGGCATTTCAAATTGCTGATCGGCATCCACAACAAGAAgtaaacatgacttgtctcttattcttaatctcacgcatccttatggtgatcttggatatgtaatggcagaaaccagctacttcttaatttatgaattggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT