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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGGAATGCTAGCTCTAGACAAGACGGAGTGGATCACAATATCCAAAAAGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAGgtaacagttctcagcttcaactgctcattgttggctttactaacctatgtttttattatcataacaacataatggtgaacctttttggaaatattggatgatgtagttgatgaattgaccagcttaatgattttttttgttagaatttcatcagcacagaaattgttttttgcag

Basic information

species Oryza sativa
transcript LOC_Os05g01240.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58676117|gb|CK064804.1|CK064804
EST:     AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAG                         CATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
genomic: AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAGgtaacagttc ... ttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
EST: gi|218499345|gb|FG943594.1|FG943594
EST:     GTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTATGATCAAAATAATGAAG                         CATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
genomic: GTGGGCCCTGCTGGTTTTTGCGGTCATTCTTT-TGATCAAAATAATGAAGgtaacagttc ... ttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
EST: gi|33794260|gb|CF323020.1|CF323020
EST:     AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAG                         CATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
genomic: AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAGgtaacagttc ... ttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA