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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtttgtttcataaaagctattattctcatgacattactgtatatgcgttggacttgaacttcttgttataacttaaaacttgtgtataagata...

Basic information

species Oryza sativa
transcript LOC_Os04g58580.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88479882|gb|CI417153.1|CI417153
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|29627056|gb|CB632067.1|CB632067
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTTTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88474449|gb|CI411720.1|CI411720
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88472220|gb|CI409491.1|CI409491
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|58604165|gb|CK014693.1|CK014693
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88248182|gb|CI248031.1|CI248031
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|29641676|gb|CB646683.1|CB646683
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|86547064|gb|CI187270.1|CI187270
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTAGCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88484906|gb|CI422177.1|CI422177
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88846893|gb|CI005872.1|CI005872
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88479864|gb|CI417135.1|CI417135
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88376207|gb|CI533109.1|CI533109
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|8859293|gb|AU096611.1|AU096611
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88510400|gb|CI437906.1|CI437906
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|88545595|gb|CI475164.1|CI475164
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|86886810|gb|CI334724.1|CI334724
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
EST: gi|86542297|gb|CI182503.1|CI182503
EST:     AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAG                         TTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA
genomic: AGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGgtgtgctgtt ... atatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGA