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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTGAACTTCTTCCAGCACATATTTCAGAAGGGATAAGGGTTATTCCTCCCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacagcatctcccaccttgatcattgattcttatcatcaattttttgccacttaagttttactagttgctgacttgatcaaattttag

Basic information

species Oryza sativa
transcript LOC_Os04g57210.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g57210.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G043862_T01 (Zea mays), 5'ss of exon 11
CCGTGAACTTCTTCCAGCACATATTTCAGAAGGGATAAGGGTTATTCCTCCCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacagcatctcccaccttgatcattgat-tcttatcatcaattttttg--ccacttaagttttactagttgctgacttgatcaaattttag
 |   ||||||||||| |  |||| |||||||| ||||| ||  | || ||  |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||     |   |||| |||  || || | | |   | |||||  |    |   | | ||| |||   |  ||   || |  || |||||
TCACCAACTTCTTCCACCTTATATGTCAGAAGGAATAAGAGTACTCCCCCCTTCATTTGGCACTGATTCTGCCTGGTTTGGTGCAAAGATGATCAGCAACgtaaggaca-----tgaaacctcgattttttatgtgtcaaatttaatttcatcattcgtgttaatttcacttactagtg-tctgctttaactttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87033311|gb|CI187935.1|CI187935
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTCTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|33686736|gb|CF314975.1|CF314975
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29626709|gb|CB631720.1|CB631720
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88549085|gb|CI478941.1|CI478941
EST:     AAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: AAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88480903|gb|CI418174.1|CI418174
EST:     TGGTGCACAAATGATTAGCCAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: TGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|5005297|gb|AU070459.1|AU070459
EST:     CAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29632995|gb|CB638004.1|CB638004
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29663904|gb|CB660179.1|CB660179
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88503568|gb|CI431074.1|CI431074
EST:     GGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: GGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29663905|gb|CB660180.1|CB660180
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29618214|gb|CB623226.1|CB623226
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88473694|gb|CI410965.1|CI410965
EST:     GATTCTGCCTGGTTTGGTGCAAAAATGATTAGCGAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: GATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88489921|gb|CI427193.1|CI427193
EST:     ATGATTAGCAAC                         GTGGGCACTTTCACGGAGGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCA
genomic: ATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGA-GGCATGGTGCATCAAGAAGAAGCAGTTTCGCCA
EST: gi|29626176|gb|CB631187.1|CB631187
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88273743|gb|CI394149.1|CI394149
EST:     AAAATGATGAGCGAC                         GTGAGCACTTTCACGGAGGCAT-GTGCATCAAGAAGAAGCCAGTTTCGCCA
genomic: AAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAG-CAGTTTCGCCA
EST: gi|89196232|gb|CI397234.1|CI397234
EST:     AAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: AAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29679980|gb|CB676255.1|CB676255
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29624048|gb|CB629059.1|CB629059
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88478221|gb|CI415492.1|CI415492
EST:     ATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: ATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|58589122|gb|CF987430.1|CF987430
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCAT
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCAT
EST: gi|29671067|gb|CB667342.1|CB667342
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88481364|gb|CI418635.1|CI418635
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCCNAAATGATTAGCNAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|7332570|gb|AU085916.1|AU085916
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29663603|gb|CB659878.1|CB659878
EST:     CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88518647|gb|CI446301.1|CI446301
EST:     CCGATTCTGCCTTGTTTNGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|29679981|gb|CB676256.1|CB676256
EST:     CCCCATTTGGCACCGATTTTGCCTGGTTTGGTGCAAAAATGATTAGCAAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: CCCCATTTGGCACCGATTCTGCCTGGTTTGGTGCAAAAATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
EST: gi|88524583|gb|CI450511.1|CI450511
EST:     ATGATTAGCCAC                         GTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG
genomic: ATGATTAGCAACgtaaggacag ... caaattttagGTGAGCACTTTCACGGAGGCATGGTGCATCAAGAAGAAGCAGTTTCGCCAG