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TCCGCGATTATATGCATCTTGAAGCTGCACGGCGAGACTTAAGATTAATAATTGAGAACAAACAGCGCATTGTTCTTGCACATGCACCTTCAGGTTACAAgtaagatattctatctttgttagacaattgttgccatctactcgacctattctctttcccccctacattttaggtacatcagaacctattctgaactgtg...
species | Oryza sativa |
transcript | LOC_Os04g56480.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATGCACCTTCAGGTTACAA GCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAAEST: gi|86505661|gb|CI148294.1|CI148294
genomic: CATGCACCTTCAGGTTACAAgtaagatatt ... tttgttaaagGCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAA
EST: ATTGAGAACAAACAGCGCATTGTTCTTGCACATGCACCTTCAGGTTACAA GCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAAEST: gi|87006648|gb|CI295031.1|CI295031
genomic: ATTGAGAACAAACAGCGCATTGTTCTTGCACATGCACCTTCAGGTTACAAgtaagatatt ... tttgttaaagGCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAA
EST: ATTGAGAACAAACAGCGCATTGTTCTTGCACATGCACCTTCAGGTTACAA GCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAAEST: gi|86854586|gb|CI258879.1|CI258879
genomic: ATTGAGAACAAACAGCGCATTGTTCTTGCACATGCACCTTCAGGTTACAAgtaagatatt ... tttgttaaagGCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAA
EST: GTTCTTGCACATGCACCTTCAGGTTACAA GCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACCCTAATAAA
genomic: GTTCTTGCACATGCACCTTCAGGTTACAAgtaagatatt ... tttgttaaagGCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGCGATTATATGCATCTTGAAGCTGCACGGCGAGACTTAAGATTAATAATTGAGAACAAACAGCGCATTGTTCTTGCACATGCACCTTCAGGTTACAAgtaagatattctatctttgttagacaattgttgccatctactcgacctattctctttcccccctacattttaggtacatcagaacctattctgaactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc