1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTTGGCTATGGAATCATGCTTCTTGAGCTCATTACAGGACAAAGGGCATTTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtaccaccacatctttatatattggggcaaccatggaagttttggttttgtttttccttgtgcatgctagttgtcctccaggacacatctttctta...
species | Oryza sativa |
transcript | LOC_Os04g38480.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|44670535|gb|CR283969.1|CR283969
genomic: TGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TGTGATGTTGCTTGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|41883645|gb|BX928529.1|BX928529
genomic: TGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATCATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|29675544|gb|CB671819.1|CB671819
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|87035916|gb|CI190538.1|CI190538
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGCTCGTCTTGCGAACGATGATGATGTGATGTTGCTCGATT-G GTGAAAGGGCTCCTGAAAGAGAAGAAGCTGGAAATGCTGGTGGACCCGGACEST: gi|29675502|gb|CB671777.1|CB671777
genomic: TTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|87039761|gb|CI194383.1|CI194383
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|29614688|gb|CB619701.1|CB619701
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|29614453|gb|CB619466.1|CB619466
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|86903581|gb|CI300435.1|CI300435
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|88964773|gb|CI084771.1|CI084771
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|29623135|gb|CB628146.1|CB628146
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|29626769|gb|CB631780.1|CB631780
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGACEST: gi|87040035|gb|CI193244.1|CI193244
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
EST: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGG GTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
genomic: TTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtacca ... gtcttttcagGTGAAAGGGCTCCTGAAAGAGAAGAAGGTGGAGATGCTGGTGGACCCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGGCTATGGAATCATGCTTCTTGAGCTCATTACAGGACAAAGGGCATTTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtaccaccacatctttatatattggggcaaccatggaagttttggttttgtttttccttgtgcatgctagttgtcctccaggacacatctttctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccac