1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGATCGACGCCTTGCTGACCATTTTGGAGGAAAGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattcttgcatacccgacttaccgcaagtaaagtttttggggaatgataattaatttagaattccaaatgtctactgccctaaaggcataatcacaa...
species | Oryza sativa |
transcript | LOC_Os03g62640.4 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGGEST: gi|29656041|gb|CB652316.1|CB652316
genomic: ACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
EST: CATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGGEST: gi|29617713|gb|CB622725.1|CB622725
genomic: CATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGGEST: gi|84117476|gb|CD151243.1|CD151243
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCEST: gi|29623912|gb|CB628923.1|CB628923
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACC
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGGEST: gi|29621718|gb|CB626729.1|CB626729
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGGEST: gi|29681846|gb|CB678121.1|CB678121
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
EST: ACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
genomic: ACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... tctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCGACGCCTTGCTGACCATTTTGGAGGAAAGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattcttgcatacccgacttaccgcaagtaaagtttttggggaatgataattaatttagaattccaaatgtctactgccctaaaggcataatcacaa
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC