1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGATCGACGCCTTGCTGACCATTTTGGAGGAAAGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattcttgcatacccgacttaccgcaagtaaagtttttggggaatgataattaatttagaattccaaatgtctactgccctaaaggcataatcacaa...
species | Oryza sativa |
transcript | LOC_Os03g62640.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGEST: gi|86502553|gb|CI145186.1|CI145186
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGEST: gi|58682879|gb|CK071566.1|CK071566
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGEST: gi|454535|gb|D28304.1|D28304
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTTAAGATGACAGGCGEST: gi|86499113|gb|CI141746.1|CI141746
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGEST: gi|29664073|gb|CB660348.1|CB660348
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGEST: gi|29661288|gb|CB657563.1|CB657563
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
EST: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTCCAG GAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
genomic: AGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattctt ... cgccttccagGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCGACGCCTTGCTGACCATTTTGGAGGAAAGCTACATTTGGGATACATGCTGATTCGTGAGAAACTGAAAGAACTACAGgtacattcttgcatacccgacttaccgcaagtaaagtttttggggaatgataattaatttagaattccaaatgtctactgccctaaaggcataatcacaa
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC