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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGgtaagcaccagcaaattttctgatttttttttcatgttgttgtgagcatgcattgggatcattgatatggaattagcattacatttttcttgatgtcaac...

Basic information

species Oryza sativa
transcript LOC_Os03g61950.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g61950.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G351160_T01 (Zea mays), 5'ss of exon 10
CTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGgtaag-caccagcaaattttctgattttttttt-catg-----ttgttgtgagcatgcattgggatcattgatatggaattagcattacatttttcttgatgtcaac
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||     |    | || ||  ||||| |||  ||      ||  ||         ||  |  || ||  | ||    || || | |||| | ||| |       
CTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGATATGATGTGTACTATAATGAATGCATTATTTTAGACAGGGgtaagatgtgaatgtaattccttttttttatttgtatagagatttactgaactgggatatgtgcgtctttcttgtgtgggtaacactgcattct-cttaac------

upper sequence: LOC_Os03g61950.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AT2G36360.4 (Arabidopsis thaliana), 5'ss of exon 10
CTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGgtaagcaccagcaaattttct------gatttttttt---tcatgttgttgtgagcatgcattgggatcattgatatggaattagcattacatttttcttgatgtcaac---------------------------------------------------
||  || | ||||| ||||||||||||||||| ||||| ||| | |||||||| ||||| |||||   ||| ||||| ||||| |||| |     ||  | | |        |||| || |    ||| |   || |   ||   | ||  || ||| |    ||  ||   |  ||||||||| | |||                                                       
CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttatcatttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88388765|gb|CI592653.1|CI592653
EST:     GCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGG                         TCTCTGTTCAATGGAAGCTCTTAGCAACAAGTAATGAGCCACCCC-TCCTC
genomic: GCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGgtaagcacca ... ggcatctcagTCTCTGTTCAATGGAAGCTCTTAGCAACAAGTAATGAGCCACCCCCTCCTC