1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGTGCCTTTCATGTGTACTCGGAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcattaattgcagtcaccatgcatattctggttattttcttgtttgtttcttcccaactattctcttactacatttatcctcacagctgtcatggacgattagcagcccgtatacgaacatttatttctaaattgagagatctaactgttgctatcttttttctgcag
species | Oryza sativa |
transcript | LOC_Os03g61710.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|55409316|gb|CV721692.1|CV721692
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|58665498|gb|CK054184.1|CK054184
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|218499430|gb|FG950945.1|FG950945
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|38565696|gb|CK085149.1|CK085149
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|38565610|gb|CK085063.1|CK085063
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|38565704|gb|CK085157.1|CK085157
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|87006813|gb|CI285847.1|CI285847
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|218498226|gb|FG955584.1|FG955584
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTAEST: gi|8858921|gb|AU096239.1|AU096239
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
EST: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAG TGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
genomic: GAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcat ... ttttctgcagTGCGGAAGATATGCTTCAAAAACTGGGCGATCTTATGAATGAAAGTCACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGCCTTTCATGTGTACTCGGAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcattaattgcagtcaccatgcatattctggttattttcttgtttgtttcttcccaactattctcttactacatttatcctcacagctgtcatggacgattagcagcccgtatacgaacatttatttctaaattgagagatctaactgttgctatcttttttctgcag
- - - - - - - - - - - AAGCAA
- - - - - - - - - - - AGCAAG