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21 5' 3' |
GTATTGCCAGAATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaatttattccgcaatttttatcactctttctatttcgtattttcttgcaatactatgagttggcatttcatctgaaaacaactctgtgcacattta...
species | Oryza sativa |
transcript | LOC_Os03g58700.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATATEST: gi|29621778|gb|CB626789.1|CB626789
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATAT
EST: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATATEST: gi|29622156|gb|CB627167.1|CB627167
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATAT
EST: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATATEST: gi|58693863|gb|CK082550.1|CK082550
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATAT
EST: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTEST: gi|58611844|gb|CK039556.1|CK039556
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTT
EST: AATTCTCGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAEST: gi|29613031|gb|CB618044.1|CB618044
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAA
EST: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATATEST: gi|33794974|gb|CF323367.1|CF323367
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATAT
EST: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAG GTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATAT
genomic: AATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaattta ... catttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTGCCAGAATTCTTGCAAGTTGAAGCTTTTGCAAAGTTCAGCAATGCTATTGGAAAGgtaaaatttattccgcaatttttatcactctttctatttcgtattttcttgcaatactatgagttggcatttcatctgaaaacaactctgtgcacattta
- - - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa