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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACCGGATGGGCCTTGGAAAATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag

Basic information

species Oryza sativa
transcript LOC_Os03g50480.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G109383_T02 (Zea mays), 5'ss of exon 10
TTGACCGGATGGGCCTTGGAAA---ATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttg--------aagtttttgtatatactcataagtgctatgagaaatttatgatg-tgtcctttgcctt-ctag--
   | || ||||| ||||||||   ||||||||||| ||| || || ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||  |   |  |   || |||         ||  |||  || | | ||   |        || |||| ||||   |  |||||||||| |||   
---AACGCATGGGTCTTGGAAAGTCATCCTCAAATGTTGAGCCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatct-gtttgagtatcttattttctacaaaatttgttacagattctagaaaagcgcaaggaattcatgacactcccctttgccttgctatag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
TTGACCGGATGGGCCTTGGAAA---ATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtat----tcttcag---cctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcc--tttgcc----ttctag
   | |||||||| ||||||||   ||||||||||| |||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    | |||      ||   ||  | |||  |||  | |  | ||   |     |  || |||| ||||||  |||  ||||||    || |||
---AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 10
TTGACCGGATGGGCCTTGGAAAATCC---TCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag
     || |||||  | || ||||||    || | | ||| |||||||| |||||||||||  ||||||||||||| |||||||||||||| || ||||||||||| | ||   | ||  | |  ||  |  |||  |||| |||  |  |  | || | ||| | || ||| |||  ||  |  |||
---CTCGTATGGGATTGGGCAAATCCGAACCACAAGATGATCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGATACTTGGTAAAAGgtagtgttgcccttaatttg--tggtgaatttaaatattctccaactttttgtgtgtaatatctg-tgtatcccctgtttgttag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 10
TTGACCGGATGGGCCTTGGAAAATCC---TCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag
     || |||||  | || ||||||    |  | |  || |||||||| |||||||||||  ||||||||||||| |||||||||||| |||| ||||||||||| | ||   | ||  | |  ||| |  |||  |||| ||| ||| |  | || | ||| | || ||| |||  ||  |  |||
---CTCGTATGGGATTGGGCAAATCCGAACCCCAAGAAGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGgtagtgttgtccttaatttg--tgatgaatttaaatattctc-taacttttttgtgtaatatctg-tgtatcccctgtttgttag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA03G05150.1 (Glycine max), 5'ss of exon 3
TTGACCGGATGGGCCTTGGAAAATCC---TCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag
     || |||||  | || |||||     |  | | ||| |||||||| |||||||||||  ||||||||||||| |||||||||||| |||| ||||||||||| | ||   | ||  | |  ||| |  |||  |||| ||| ||| |  | || | ||| | || ||| ||| |||  |  |||
---CTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGgtagtgttgtccttaatttg--tgatgaatttaaatattctc-taacttttttgtgtaatatctg-tgtatcccttgtttgttag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 10
TTGACCGGATGGGCCTTGGAAAATCCTCAAATGC---TGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaattta---tgatgtgtcctttgccttctag
     || |||||  | || ||||||   | ||    |||||| ||||| ||||| || || |||||||||||||| || || |||||||| || |||||||||||   | | | |    |     ||  |   |  ||  |   |  | | | | |     || |   | | || ||  ||   || |||
---CACGAATGGGATTAGGTAAATCCGACACTGGAGGTGAACCTCCAGAGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGTAACATGATCCTTGGTAAAAGgtagcttactgacgttttcaagagagatacatccatggaactagta-taccaagtacttttaaacttaaagtatctcttcatttgtag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 10
TTGACCGGATGGGCCTTGGAAAATCCTCAAATGCTG------AACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag----------------
      | |||||  |  | ||| |     ||||||      | || ||||| ||||| || || |||||||||||||| || || |||||||| || |||||||||||       ||  |||    ||    |||  ||     | || |  ||    | | |  |     | |  || ||  |    |                 
------GCATGGGATTGAGTAAAACTGATGATGCTGGTGGCGAGCCTCCAGAGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGAAACATGATCCTCGGTAAAAGgta-------gcagagactaattctcttttaagtgagatcacagagatgtggagcggatataccactctccccgttaaccaaaaatatctcttctccgcag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 11
TTGACCGGATGGGCCTTGGAAAATC---CTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag
      | |||||  | || |||||     | ||   ||| || ||||| |||||||| ||  ||||||||||||| ||||| |||||||| || || |||||||| |  |   | |   |      |||  |   |||    | | |   |   | |   |  |  ||| |  | |      ||   
---CATGTATGGGATTGGGTAAATCAGATGCTAAAAATGAGCCACCAGAGTTTGGTGCCGCTTCTGATGGTGATGCAGATCGTAACATGATCCTTGGCAAAAGgtagtactgcacttcatttctggaaagaatacttattatttgacataagtcttaaatcacct--gatttaccttgcaatgtcag-

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: PP1S4_12V6.2 (Physcomitrella patens), 5'ss of exon 11
TTGACCGGATGGGCCTTGGAAAATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtat-tcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag---------------
|  |    |||||  | || ||  |   |  ||  ||    || ||||| ||||| || ||||||||||||||||| || ||||||||| |||| || | |||| |  ||||       | ||   | |  |||| |  |   ||  |     |||     ||    | | ||||   ||  |||                
TGCAAGTTATGGGATTGGGCAAGACTCAACCTGACGAGATTCCGGAATTCGGTGCCGCTGCTGATGGTGATGCTGACCGAAACATGATTTTGGGCAAGAAgtatgtgatcagggctcccatctacgactccttgtcttaatctatctggaagttgatgtgatttctgtat-tcctgatcccgctaattctgtgttagcttt

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
lower sequence: PP1S168_70V6.2 (Physcomitrella patens), 5'ss of exon 11
TTGACCGGATGGGCCTTGGAAAATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtat---tcttcagcctagatagcttgaa--gtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag----------
|  |    |||||  | || ||  ||  |   | |||    || ||||| ||||| || ||||| |||||||||||||| ||||||||||| || || |||||    |  ||||      |  ||  ||     |      ||| ||    ||| ||    | || | |  ||| | |||    || |            
TGCAAGTCATGGGATTGGGCAAGACCCAACCAGATGAGGTTCCGGAATTCGGTGCCGCGGCTGACGGTGATGCTGATCGGAACATGATTCTTGGCAAGAGgtacatatgatcagagcgtctcactgaaaccacatcgcccaatattctcttgtggtagttcatatgttttctgtattcttccttttgtgcaatttactgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58663537|gb|CK052223.1|CK052223
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58695799|gb|CK084486.1|CK084486
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAAAACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|45244957|gb|AB118181.1|AB118181
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58604743|gb|CK015271.1|CK015271
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58663518|gb|CK052204.1|CK052204
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58596192|gb|CK006720.1|CK006720
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|29664693|gb|CB660968.1|CB660968
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAANAG                         ATTCTTCGTAACACCT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCT
EST: gi|58596286|gb|CK006814.1|CK006814
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58682481|gb|CK071168.1|CK071168
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|218492308|gb|FG946716.1|FG946716
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|163918448|gb|EG711618.1|EG711618
EST:     GATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|15008682|gb|AU223070.1|AU223070
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAG
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAG
EST: gi|33380770|gb|CF196113.1|CF196113
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58670270|gb|CK058956.1|CK058956
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|2428319|gb|C72782.1|C72782
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58671485|gb|CK060171.1|CK060171
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58597742|gb|CK008270.1|CK008270
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|29689390|gb|CB685665.1|CB685665
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58604363|gb|CK014891.1|CK014891
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|58601534|gb|CK012062.1|CK012062
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
EST: gi|12622980|gb|AU173193.1|AU173193
EST:     GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAG                         ATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 134

TTGACCGGATGGGCCTTGGAAAATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttca ... tgccttctagATTCTTCGTAACACCTTCAGATTCGGTTGCCATTATTGCAGCCAATGCTGTTCAGTCGATTCCTTACTTTTCTTCTGGCCTTAAGGGAGTTGCCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGACCGGATGGGCCTTGGAAAATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtattcttcagcctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcctttgccttctag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT