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GCAAGTACAACAACAAGGCAGCCTTCTTAATGTTTCTCATATAACGGGCATAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAGgtacttcacgctgttattatttaattgaattgtattgtgttacatgaaggtctccttgtggttgagaaacacaacatagttgatcacatcagatatatct...
species | Oryza sativa |
transcript | LOC_Os03g44900.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAG TTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGGEST: gi|58586667|gb|CF984975.1|CF984975
genomic: TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAGgtacttcacg ... atttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG
EST: CAAACCCGCTCTTACAACAG TTTAACTCTCAGAGTTCCTCTATTTCCTCCCAGAGCGGGTATTGGGCTTGGEST: gi|58676955|gb|CK065642.1|CK065642
genomic: CAAACCCGCTCTTACAACAGgtacttcacg ... atttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCA-AGCGGGTATTGGGCTTGG
EST: TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAG TTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG
genomic: TAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAGgtacttcacg ... atttatgcagTTTAACTCTCAGAGTTCCTCTATTTCCTCCCAAGCGGGTATTGGGCTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTACAACAACAAGGCAGCCTTCTTAATGTTTCTCATATAACGGGCATAAGTCAGAAGCAATTTCCATCACAACAACCAAACCCGCTCTTACAACAGgtacttcacgctgttattatttaattgaattgtattgtgttacatgaaggtctccttgtggttgagaaacacaacatagttgatcacatcagatatatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA