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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAGgtttgcagtagtgcttatgtgtcactatgtgaaagagatacccatgcgtgctatggctaacgtcctcgatgctatttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g43930.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 3
GTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAGgtttgcagtagtgcttatgtgtc----------------actatgtgaaagagat------acccat-gcgtgctatggctaacgtcctcgatgctatttgcag
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||  || ||| | ||||||                  || | ||||     |      ||||||  | ||  |   ||||| || |  |||  |||| |||
GTCACATTAGGCAAATTGCGCATGAATCTAGTGGGGAAATGCCCTATGGAGGGGGCCGACAGCCAGCAGTTTTGAGAACATTTAGCCAGAGGCTTAGCAGgtttgtggtcgtgttcatgtgttctcatttaccatttgtgctgtttgaatttattgccaggacccatcacatggcacttctaacttctttaatgtaatttacag

upper sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 10
GTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAGgtttg---cagtagtgcttatgtgtcactatgtgaaagagatacccatgcgtgctatggctaacg-tcct-------cgatgctatttgcag-----------
|  |  | || ||||||||||| ||||||||||| ||| | |  ||||| ||||| |||||||| || ||  |||| ||||||||||| |||||  ||| ||  |   |  |  |  ||    ||  |   ||     |  | |  |  |   ||||    | |  ||||       | ||  | |||  |            
GAAATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCAGTATGGTGGGGGTCGTCAGCCTGCTGTCTTGAGGACATTTAGTCAAAGGCTTTGCAAgtaaggccctttcatatttggtggttgcatagttgggcatttgcttaatcactctatcttcatcaatccttattgaccaataatttttttaaaatttatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673031|gb|CK061717.1|CK061717
EST:     GGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAG                         AGGCTTCAATGATTGCTGTCAATGGATTCCCAGATGATGGCTGGTCACTGA
genomic: GGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAGgtttgcagta ... ctatttgcagAGGCTTCAATGA-TGCTGTCAATGGATTCCCGGATGATGGCTGGTCACTGA
EST: gi|29625769|gb|CB630780.1|CB630780
EST:     GGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAG                         AGGCTTCAATGATGCTNGTCA-TGGATTCC
genomic: GGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAGgtttgcagta ... ctatttgcagAGGCTTCAATGATGCT-GTCAATGGATTCC