1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttctacaaatattcttgctctattgcaagtttgcaataggctccatttctatttccagcactccaaagttttcctgatctaaaaaatacatgtt...
species | Oryza sativa |
transcript | LOC_Os03g38590.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGEST: gi|29662769|gb|CB659044.1|CB659044
genomic: CATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
EST: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATAGTGTTATCGTTGGGEST: gi|25799630|gb|CA755591.1|CA755591
genomic: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
EST: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTTCAGCAEST: gi|29662682|gb|CB658957.1|CB658957
genomic: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCA
EST: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGEST: gi|86511240|gb|CI153873.1|CI153873
genomic: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
EST: ATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGEST: gi|29662718|gb|CB658993.1|CB658993
genomic: ATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
EST: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGEST: gi|86261561|gb|CI017303.1|CI017303
genomic: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
EST: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGAC AGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
genomic: GTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttct ... ctttgtgcagAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACgtaagtttctacaaatattcttgctctattgcaagtttgcaataggctccatttctatttccagcactccaaagttttcctgatctaaaaaatacatgtt
- - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat