1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaacaccgttctataacatactttattctgaagccaaaacttttgattttaattctttttttcttttgcag
species | Oryza sativa |
transcript | LOC_Os03g20520.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|218492797|gb|FG953626.1|FG953626
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|218505492|gb|FG958279.1|FG958279
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|25803052|gb|CA759013.1|CA759013
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAGATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|88847669|gb|CI018360.1|CI018360
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|88989740|gb|CI107427.1|CI107427
genomic: TATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|8859147|gb|AU096465.1|AU096465
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|701663|gb|D47954.1|D47954
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|89181360|gb|CI112866.1|CI112866
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: CATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|86429502|gb|CI076183.1|CI076183
genomic: CATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: GAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTNAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|29657637|gb|CB653912.1|CB653912
genomic: GAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCGEST: gi|58690521|gb|CK079208.1|CK079208
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
EST: TTCCCACGATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAG TTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
genomic: TTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaaca ... tcttttgcagTTTTCTGTGACGGAGCACTTTAGAGAAGCAATTGGCTATCCCAGGCCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGgtaagcaacaccgttctataacatactttattctgaagccaaaacttttgattttaattctttttttcttttgcag
- - - - - - - - - - - - - AGAGGA