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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGAGGCTCCATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACGgtaggaatttactgccttttagtttgatacctcttaaatgacctttcacactgattatctgtagatctcttacaaacttgtactgcttacag

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G047894_T03 (Zea mays), 5'ss of exon 9
GTTCGAGGCTCCATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACGgtaggaatttactgcctttta-gtttgatacctcttaaatgacctttcacactgattatctgtagatctcttacaaacttgtactgcttacag
 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | || | ||| ||||||||||| ||||| ||| ||||||  | | ||||| | |  |||| |  ||  |  |||     |||  |  |     |||  | ||||                  
CTTCGAGGTTCAATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCACGGCTTAGCATTATTGAACATGAAGAAACTgtaagaatttgttacattttacgctccatacttaata--tagcctgatg-acttctcttaaactgattccatacag-----------------

upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 10
GTTCGAGGCTCCATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACGgtaggaatttactgcct--tttagtttgatacctcttaaatg-acctttcaca--ctgattatctgtagatctcttacaaacttgtactgcttacag
|||||||| || |||||||| |||||||||||||| || ||||| |||||||| ||| | || |  || ||  | |||||| |||| ||| |  |||| | |    | ||||||  ||    || | |     || ||||   |||  |||| |  || | |        |   |||  | |||
GTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACTgtatgcttttattccaagatgtagttttctatggtttgagtttgagttgcacaatttgagcatctattaatgtttgtgtttggtcctctgtattcag