Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTAGATGTTAACAACAGCTTTGTTGATGACTCAATCATAATGGATAACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatttcaaattctagcaggactgacttaaaaagtttgatacagtattttttccctagatattcaacttcatagttaaatccttggtttaaagat...

Basic information

species Oryza sativa
transcript LOC_Os03g17980.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17980.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G107867_T01 (Zea mays), 5'ss of exon 10
TATGTTAGATGTTAACAACAGCTTTGTTGATGACTCAATCATAATGGATAACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatttcaaattctagcaggactgacttaaaaagtttgatacagtattttttccctagatattcaacttcatagttaaatccttggtttaaagat-
 | ||||||||  | |||||||||| ||| |||||| | ||| |||||||| | |||||  ||||||||||||||| ||||||||||||||||| |||||||||| | |  |   ||  |  |    | |     |   | | |  || |||| ||    |    ||   |  |  |   | | |  ||||  |   ||  
CACGTTAGATGCCAGCAACAGCTTTCTTGGTGACTCTACCATCATGGATAATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagtagctcgttacactaaatttcatcatcatgatataacccattattgttgatttgtccatcacatgttttgaatta-ttgttggagtggtgaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88540412|gb|CI469307.1|CI469307
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88666185|gb|CI716341.1|CI716341
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|89178185|gb|CI391364.1|CI391364
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGACATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88558926|gb|CI489458.1|CI489458
EST:     GGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88522347|gb|CI450100.1|CI450100
EST:     ACGGTGATGTAAATGGGAGGGTACCTGCTNTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88905013|gb|CI712312.1|CI712312
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88567147|gb|CI497864.1|CI497864
EST:     TGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: TGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86427605|gb|CI072702.1|CI072702
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88286692|gb|CI517803.1|CI517803
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86492611|gb|CI135244.1|CI135244
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88543834|gb|CI473875.1|CI473875
EST:     CGGTGATGTAAATGGGAGGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: CGGTGATGTAAATGGGA-GGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|27549003|gb|CA766964.2|CA766964
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|89172627|gb|CI721686.1|CI721686
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCCAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|163927737|gb|EG712485.1|EG712485
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|24468828|gb|CA305777.1|CA305777
EST:     ACGATGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88568558|gb|CI499275.1|CI499275
EST:     GTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|89175251|gb|CI111770.1|CI111770
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|89171820|gb|CI720879.1|CI720879
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88904807|gb|CI712106.1|CI712106
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|89186738|gb|CI052151.1|CI052151
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|38477992|gb|CF962125.1|CF962125
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88973462|gb|CI717890.1|CI717890
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29672731|gb|CB669006.1|CB669006
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88967880|gb|CI098122.1|CI098122
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29673828|gb|CB670103.1|CB670103
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|38483178|gb|CF966980.1|CF966980
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88566167|gb|CI496884.1|CI496884
EST:     CCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: CCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29616520|gb|CB621532.1|CB621532
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88523148|gb|CI450951.1|CI450951
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88541314|gb|CI470577.1|CI470577
EST:     TGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: TGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88675884|gb|CI729456.1|CI729456
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88558083|gb|CI488544.1|CI488544
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88292574|gb|CI502819.1|CI502819
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|2317410|gb|C22464.1|C22464
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|89182206|gb|CI113575.1|CI113575
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|18387832|gb|BM421030.1|BM421030
EST:     GATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|2317304|gb|C22358.1|C22358
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29627234|gb|CB632245.1|CB632245
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29663427|gb|CB659702.1|CB659702
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88668394|gb|CI721956.1|CI721956
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|218493226|gb|FG956765.1|FG956765
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAAAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86426169|gb|CI071266.1|CI071266
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88954559|gb|CI718538.1|CI718538
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86526185|gb|CI166391.1|CI166391
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88902528|gb|CI088066.1|CI088066
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88532628|gb|CI462123.1|CI462123
EST:     CGGTGATGTAAATGGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: CGGTGATGTAAAT-GGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88665629|gb|CI715785.1|CI715785
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88594082|gb|CI713253.1|CI713253
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88552853|gb|CI482903.1|CI482903
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29614996|gb|CB620009.1|CB620009
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88289554|gb|CI522687.1|CI522687
EST:     TGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: TGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|66915430|gb|CX102278.1|CX102278
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88672548|gb|CI726664.1|CI726664
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|325493532|gb|JG458056.1|JG458056
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAA                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|218504457|gb|FG953019.1|FG953019
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86489325|gb|CI131958.1|CI131958
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86432280|gb|CI085891.1|CI085891
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88831211|gb|CI082021.1|CI082021
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88567870|gb|CI498587.1|CI498587
EST:     GCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|2317411|gb|C22465.1|C22465
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|18388676|gb|BM421874.1|BM421874
EST:     ACAGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTAC-AGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|2800118|gb|AA753107.1|AA753107
EST:     CGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: CGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88903036|gb|CI088574.1|CI088574
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|11025963|gb|AU162564.1|AU162564
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88972756|gb|CI717482.1|CI717482
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88285170|gb|CI502507.1|CI502507
EST:     GGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88833351|gb|CI076832.1|CI076832
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88379673|gb|CI501575.1|CI501575
EST:     GGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGAATATGCAGAGAGTTACG
genomic: GGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86491517|gb|CI134150.1|CI134150
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88565605|gb|CI496322.1|CI496322
EST:     GTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|29672696|gb|CB668971.1|CB668971
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88672578|gb|CI726694.1|CI726694
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88287649|gb|CI507539.1|CI507539
EST:     GATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: GATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|88845077|gb|CI084002.1|CI084002
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86510847|gb|CI153480.1|CI153480
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86491677|gb|CI134310.1|CI134310
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
EST: gi|86490455|gb|CI133088.1|CI133088
EST:     ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAG                         CTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG
genomic: ACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 179

TATGTTAGATGTTAACAACAGCTTTGTTGATGACTCAATCATAATGGATAACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGgtgtgcaatt ... ttttcttcagCTTTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACGGGGCCTCAGCTCCTTTTCCTGGACTTCTGTGCAGACTTCCTTACCAAGC




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