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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTAGTGGTAATGACTTGTATCAGAATGGGGTCTGTTACCGAGAAGCTGCATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgttttcagttacacgcctatcaaagtcatgagtcctaaaattagtagtattaatcacttgaactctttgagggggctatgaattctactcagt...

Basic information

species Oryza sativa
transcript LOC_Os03g17570.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17570.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G095727_T01 (Zea mays), 5'ss of exon 10
CGGTAGTGGTAATGACTTGTATCAGAATGGGGTCTGTTACCGAGAAGCTGCATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgttttcagttacacgcctatcaaagtcatgagtcctaaaattagtagtattaatcacttgaactctttgagggggctatgaattc-tactcagt------
 || ||||| |||||| ||||||||||| || ||    | |||||||||||||||||||||||||||| ||| |||||||   |||||||||| |||||||||||||||||||||||||| |||| |   ||  ||||  | | |||| |||| ||    | | ||||     |||| ||| ||   | ||  ||   |        
TGGGAGTGGCAATGACATGTATCAGAATCGGTTCCTGCAACGAGAAGCTGCATTGAACAAATTCAGACTGAAGCGGAAAGATCGGAACTTTGGTAAAAAGgtagcctgttttcagttacatgcctgttgtagctatga--cttgaaatcagtaata---gttatttgaggg--ttgaagggccttccacttaatatataaaagtaag

upper sequence: LOC_Os03g17570.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G095727_T04 (Zea mays), 5'ss of exon 11
--------CGGTAGTGGTAATGACTTGTATCAGAATGGGGTCTGTTACCGAGAAGCTGCATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgttttcagttacacgcctatcaaagtcatgagtcctaaaattagtagtattaatcacttgaactctttgagggggctatgaattc-tactcagt
         || ||||| |||||| ||||||||||| || ||    | |||||||||||||||||||||||||||| ||| |||||||   |||||||||| |||||||||||||||||||||||||| |||| |   ||  ||||  | | |||| |||| ||    | | ||||     |||| ||| ||   | ||  ||   |  
AGTGGGAGTGGGAGTGGCAATGACATGTATCAGAATCGGTTCCTGCAACGAGAAGCTGCATTGAACAAATTCAGACTGAAGCGGAAAGATCGGAACTTTGgtaaaaaggtagcctgttttcagttacatgcctgttgtagctatga--cttgaaatcagtaata---gttatttgaggg--ttgaagggccttccacttaatatata--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87021094|gb|CI271901.1|CI271901
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29642420|gb|CB647427.1|CB647427
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|86479881|gb|CI122514.1|CI122514
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|25778066|gb|CA752818.1|CA752818
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCATCTGCCCTCGGATCCG
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGC-GCCCTCGGATCCG
EST: gi|86482506|gb|CI125139.1|CI125139
EST:     CATTGAACGAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|218499020|gb|FG959222.1|FG959222
EST:     CATTGAACAAATTCAGACAGAAACGGCAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29668908|gb|CB665183.1|CB665183
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGTTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|87029858|gb|CI274539.1|CI274539
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|88226911|gb|CI224679.1|CI224679
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29641357|gb|CB646364.1|CB646364
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|88198221|gb|CI198071.1|CI198071
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29642422|gb|CB647429.1|CB647429
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29617887|gb|CB622899.1|CB622899
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTCGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|86833914|gb|CI338285.1|CI338285
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGACCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|86479862|gb|CI122495.1|CI122495
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|8856605|gb|AU093923.1|AU093923
EST:     CATTGAACAATTTCAGCCAGAACCGGAAAGTGAGGAACTTTGGAAAAAA-                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29661059|gb|CB657334.1|CB657334
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|88455358|gb|CI519379.1|CI519379
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGGTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|86524675|gb|CI164881.1|CI164881
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|86836725|gb|CI347351.1|CI347351
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|88246442|gb|CI246291.1|CI246291
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|84117030|gb|CD150797.1|CD150797
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|218484896|gb|FG966546.1|FG966546
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|86415638|gb|CI029649.1|CI029649
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
EST: gi|29623118|gb|CB628129.1|CB628129
EST:     CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAG                         GTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC
genomic: CATTGAACAAATTCAGACAGAAACGGAAAGTGAGGAACTTTGGAAAAAAGgtagcctgtt ... ctattttcagGTGCGCTATCAGAGCAGAAAGAGGTTGGCTGAGCAGCGCCCTCGGATCCGC