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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTAACGGGCTCCATTCTTGCCCATGAATTGATGCATGGGTGGTTGCGCCTCAAAGgtaatcatctgaacatccatttctcccattttctgaaatcctatctgaacattaattaatttctttgtatcctgtctgacaatggcacctacag

Basic information

species Oryza sativa
transcript LOC_Os03g16090.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G160198_T01 (Zea mays), 5'ss of exon 11
GCTGCTAACGGGCTCCATTCTTGCCCATGAATTGATGCATGGGTGGTTGCGCCTCAAAGgta---------atcatctgaacatccatttctcccattttctgaaatcctatctgaacattaattaatttctttgtatcctgtctgacaatggcacctacag------------------
||| || || || ||||| || ||||||||  ||||||| |||||| |||||||||||||||         ||   |  |||||    | | |||||||       |  | | ||||  |     ||    | | |||  | || | |||  || |   | |                  
GCTACTGACAGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGCCTCAAAGgtacatgcatggatggacaaaacatttcatacacccatttatcatctttatttatgaatttcttggaaaaaatatatatttt-tccgccaaaagcccaaccggatcgtacttttcattcag

upper sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 11
GCTGCTAACGGGCTCCATTCTTGCCCATGAATTGATGCATGGGTGGTTGCGCCTCAAAGgta-----atcatctgaacatccatttctcccattttctgaaatc---ctatctgaacattaattaatttctttgtatcctgtctgacaatggcacctacag----
||| ||||| || ||||| || ||||||||  ||||||| |||||||||||||||||||||      | ||| | |    ||  || |  ||| ||     |||       | ||| |  |||  ||||         ||     |   |  | | | ||     
GCTACTAACAGGATCCATCCTCGCCCATGAGCTGATGCACGGGTGGTTGCGCCTCAAAGgtgcaaggaacatttcatagccccattttttcatctttatttatcaattcgacagaagaaaaatgtattttcaaaagctctactgaatcgtacc-ctttcattcag

upper sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv13s0019g02430.t01 (Vitis vinifera), 5'ss of exon 11
GCTGCTAACGGGCTCCATTCTTGCCCATGAATTGATGCATGGGTGGTTGCGCCTCAAAGgtaatcatctgaacatccatttctcccattttctgaaatcctatctgaacattaattaatttctttgtatcctgtctgacaatggcacctacag
| | || || ||  | |||||||| |||||| |||||||||||||| | ||||| |||||||     ||||   || || | | ||  |    |  ||| |  |   | ||       |||  ||||||    | |  ||             
GTTACTGACAGGAGCTATTCTTGCTCATGAACTGATGCATGGGTGGCTACGCCTTAAAGgtacaacactga--ctcaatcttttcc--tcaagggcatcttcacaagaaatgccaatgttttcttgtatta-attttgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


Nothing found