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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAAGAGTGCTCAGGTGCCAGAGCAGTGCATTGATGTTCTCCCCTCACAGTTTGGCAGGCAGAATCAAGACCAAGTTACCACGAACCAAGTTTTTGAGgtactacagttttgtgcatacttttgtcaagtgaacattccagtgataatcgtgtatcttctaattgtttctgtacttcag

Basic information

species Oryza sativa
transcript LOC_Os03g13790.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89177736|gb|CI390915.1|CI390915
EST:     GTTTGGCAGGCAGAATCAAGACCAATTTACCACGAACCAAGTTTTTGAG                         GTTGATCAAGGGATGGATTGTGCTGCAGTATCTGAAGGAGAGTGGGCAGAT
genomic: GTTTGGCAGGCAGAATCAAGACCAAGTTACCACGAACCAAGTTTTTGAGgtactacagt ... tgtacttcagGTTGATCAAGGGATGGATTGTGCTGCAGTATCTGAAGGAGAGTGGGCAGAT
EST: gi|29644350|gb|CB649357.1|CB649357
EST:     AGTTTGGCAGGCAGAATCAAGACCAAGTTACCACGAACCAAGTTTTTGAA                         GTTGATCAAGGGATGGATTGTGCTGCAGTATCTGAAGGAGAGTGGGCAGAT
genomic: AGTTTGGCAGGCAGAATCAAGACCAAGTTACCACGAACCAAGTTTTTGAGgtactacagt ... tgtacttcagGTTGATCAAGGGATGGATTGTGCTGCAGTATCTGAAGGAGAGTGGGCAGAT