1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGCTCGCCATGGACCTACCATCATGGCGGCCTTCCAGATCTGCTGCCAGCTCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAGgtcagattaccatgtcctaatctcatatatgtctaatctcatatatgtgttcatagagcagctgtttcagactttcagctgtgttcggttgttcatcgatctgtaattttcctcatggttgcag
species | Oryza sativa |
transcript | LOC_Os03g11734.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGATGGACTTGCCGTCGCTGGGCAG GCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTTEST: gi|218504647|gb|FG960764.1|FG960764
genomic: TTGCTGATGGACTTGCCGTCGCTGGGCAGgtcagattac ... atggttgcagGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTT
EST: TCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAG ----TTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTGGTTGTTEST: gi|86495252|gb|CI137885.1|CI137885
genomic: TCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAGgtcagattac ... atggttgcagGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTT
EST: CACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAG GCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTT
genomic: CACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAGgtcagattac ... atggttgcagGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTCGCCATGGACCTACCATCATGGCGGCCTTCCAGATCTGCTGCCAGCTCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAGgtcagattaccatgtcctaatctcatatatgtctaatctcatatatgtgttcatagagcagctgtttcagactttcagctgtgttcggttgttcatcgatctgtaattttcctcatggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA