1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTTATGGAGATTGGTAACTTAGGAAACTTGTACATTGATGAGCAAGCACCATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattatttaaaattgtcacagtttgtcttacttgtttcagatttcagatgcctgcatgagtctgaatgtaccgaccagcatcaataaataaaatttgc...
species | Oryza sativa |
transcript | LOC_Os03g11120.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAG GATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCAEST: gi|218481368|gb|FG954011.1|FG954011
genomic: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattattt ... ctatcttcagGATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
EST: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAG GATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCAEST: gi|29619404|gb|CB624416.1|CB624416
genomic: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattattt ... ctatcttcagGATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
EST: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAG GATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCAEST: gi|86501405|gb|CI144038.1|CI144038
genomic: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattattt ... ctatcttcagGATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
EST: CATGGTCTTGTTTCAACCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAG GATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCAEST: gi|88974217|gb|CI019890.1|CI019890
genomic: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattattt ... ctatcttcagGATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
EST: AGGCAGCGAAG GATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCAEST: gi|58685168|gb|CK073855.1|CK073855
genomic: AGGCAGCGAAGgtaattattt ... ctatcttcagGATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
EST: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAG GATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
genomic: CATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattattt ... ctatcttcagGATCTTGTTATTATTTTGGAGACTATGAGAATAATTGCAATTGCACTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTATGGAGATTGGTAACTTAGGAAACTTGTACATTGATGAGCAAGCACCATGGTCTTGTTTCAAGCAAGGGGGTGAGAGTGCTGAAAAGGCAGCGAAGgtaattatttaaaattgtcacagtttgtcttacttgtttcagatttcagatgcctgcatgagtctgaatgtaccgaccagcatcaataaataaaatttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa