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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGgtaactttctatgtcataatgtttgggttcgtttgttcctgatatttggctgatacaatggggtcggagatgctcatacatcataaatacgataaagagg...

Basic information

species Oryza sativa
transcript LOC_Os03g08070.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08070.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM5G855347_T02 (Zea mays), 5'ss of exon 5
GTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGgtaactttctatgtcataatgtttgggttcgtttgttcctgatatttggctgatacaatgggg-tcggagatgctcataca-tcataaatacgataaagagg--
||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| || |||||||||||||  |||  |||||   | | ||||||| |||  ||    | | |  |||||| |  || |  ||  || | || |  ||  |  ||   ||  
GTTGTTTCCTGTCCTTGTGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAGgtaactttctataccatc-tgtttccatccatttgttc-tgactttca--taacatgatggggattagataaacttgtagactctttcatgagcaaatttgggt

upper sequence: LOC_Os03g08070.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM5G855347_T03 (Zea mays), 5'ss of exon 1
---------------------------------GTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGgtaactttctatgtcataatgtttgggttcgtttgttcctgatatttggctgatacaatgggg-tcggagatgctcataca-tcataaatacgataaagagg--
                                 ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| || |||||||||||||  |||  |||||   | | ||||||| |||  ||    | | |  |||||| |  || |  ||  || | || |  ||  |  ||   ||  
TTTTGACTAATTCTGTGAACTTTACTCCTGCAGGTTGTTTCCTGTCCTTGTGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAGgtaactttctataccatc-tgtttccatccatttgttc-tgactttca--taacatgatggggattagataaacttgtagactctttcatgagcaaatttgggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622946|gb|CB627957.1|CB627957
EST:     TGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGG                         GTGCTAAACGGGGACTACTTATTAGAGGGGGTGATG
genomic: TGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGgtaactttct ... cttaaactagGTGCTAAACGGGGACTACTTATTAGAGGGGGTGATG