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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCGGCACGCTTATCTGGATCTCTTTTGTTCCACTCGTCgtaagtgcgaattatatatatttcttgacttcttgtgcaaatgaatagtcaacagaatcatgattttatcctacaaggtatgcaaaacatttgacaaaaaaaatgcatgccgttgtctttag

Basic information

species Oryza sativa
transcript LOC_Os03g03700.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03700.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G032219_T02 (Zea mays), 5'ss of exon 10
GGTTCGGCACGCTTATCTGGATCTCTTTTGTTCCACTCGTCgtaagtgcgaattatatatatttcttgacttc---ttgtgcaaatgaatagtcaacagaatcatgattttatcctacaaggtatgcaaaa---catttga------caaaaaaaatgca--tgccgttgtctttag----------------------------------------------------
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GATTCGGCACGCTTGTCTGGATCTCTTTTGTCCCGCTCGTTgtaagtgttgacgccatcgtcttcgtctctttagttttcttagagcaactccctctatctgcctgtccgtccctgttggcacagacaaagagccaattggtcattccaaaacagatccagctaaaaccgccttggaattaatgtaatactacagtatagtataagcaaaggcgtcgtcgttgtttcag