1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CATTCGTAAAGTCACTGCACTATGCATAGGAAATGCCAAATACTTCGGCGGTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGgtgcctaaaaagtcatttttctttatagttttgagtaagcattaagaaaagttagcctttgttaatttatgtgtcatttcatag
species | Oryza sativa |
transcript | LOC_Os03g03400.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAG GTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCATEST: gi|29641406|gb|CB646413.1|CB646413
genomic: GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGgtgcctaaaa ... catttcatagGTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCAT
EST: GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAG GTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCATEST: gi|88832770|gb|CI369660.1|CI369660
genomic: GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGgtgcctaaaa ... catttcatagGTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCAT
EST: ACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAG GTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCATEST: gi|29641179|gb|CB646186.1|CB646186
genomic: ACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGgtgcctaaaa ... catttcatagGTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCAT
EST: GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAG GTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCAT
genomic: GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGgtgcctaaaa ... catttcatagGTCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCGTAAAGTCACTGCACTATGCATAGGAAATGCCAAATACTTCGGCGGTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGgtgcctaaaaagtcatttttctttatagttttgagtaagcattaagaaaagttagcctttgttaatttatgtgtcatttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT