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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCTTAAATGCGTTTGATAAAGAAGCCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttcctgttcacttgctttgtactcaaccttgtagttttatacattgtttttgtttatctcgtggcatttatatcttgatctcctctaatgtca...

Basic information

species Oryza sativa
transcript LOC_Os03g02850.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G171469_T03 (Zea mays), 5'ss of exon 4
ATGTGCTTAAATGCGTTTGATAAAGAAGCCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttcctgttcacttgctttgt--actcaaccttgtagttttatacat-tgtttttg--tttatctcgtggcatttatatcttgatctcctcta-atg-tca-------------------------------------------------------
|||||||| | ||| ||| | ||||| || ||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||  | ||||  |   ||||     ||   ||  ||||       |  || ||||   |||  | |||| |   ||   | |||||| | || ||| ||                                                        
ATGTGCTTGAGTGCTTTTAACAAAGATGCTGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTTTACTACCTGgtatgt-tttttattcaaataaattgtttgtgcaggtttagagttaatagtgtgcgtctttggacttactttgtggtaccaat---tagatctcttatatatggtcggtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88825029|gb|CI775594.1|CI775594
EST:     CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|29659764|gb|CB656039.1|CB656039
EST:     CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|86413919|gb|CI068126.1|CI068126
EST:     CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|88450172|gb|CI541933.1|CI541933
EST:     CCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: CCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|29664030|gb|CB660305.1|CB660305
EST:     CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|89168924|gb|CI020464.1|CI020464
EST:     ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|88735360|gb|CI758868.1|CI758868
EST:     CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|86498594|gb|CI141227.1|CI141227
EST:     ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
genomic: ATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA
EST: gi|41881458|gb|BX927423.1|BX927423
EST:     CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTG                         TTGGTTGAGATTGTACCTTCAGCTTTGGTGCTTTTCATATTAAGGAAACTA
genomic: CCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttc ... tctttggcagTTGGTTGAGATTGTACCTTCAGCTTTGGTGCTGTTCATATTAAGGAAACTA