1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTAAACGAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATTgtaagtgaacactcaccaatatttctttttttttccctcagtgtgtagttatgatggttaagataaaaggcactgcttgtacaattttgtgctaagtgatgactctcttaatgtttag
species | Oryza sativa |
transcript | LOC_Os03g01750.7 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATT CTGACAGGCTTATCAAAGAATTCCATCACTEST: gi|55828006|gb|AU065392.2|AU065392
genomic: GAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATTgtaagtgaac ... taatgtttagCTGACAGGCTTATCAAAGAATTCCATCACT
EST: GAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATT CTGACAGGCTTATCAAAGAATTCCATCACTTTGAAGTGGGEST: gi|428438|gb|D24587.1|D24587
genomic: GAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATTgtaagtgaac ... taatgtttagCTGACAGGCTTATCAAAGAATTCCATCACTTTGAAGTGGG
EST: GAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATT CTGACAGGCTTATCAAAGAATTCCATCACTTTGA
genomic: GAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATTgtaagtgaac ... taatgtttagCTGACAGGCTTATCAAAGAATTCCATCACTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAAACGAGCTTGCTTTCCAAAGTTGGAAGCCATTAAATTGGCTACTGCTGACATTgtaagtgaacactcaccaatatttctttttttttccctcagtgtgtagttatgatggttaagataaaaggcactgcttgtacaattttgtgctaagtgatgactctcttaatgtttag
- - - GAGCTT
- - - - - - - - - - - - TGGAAG