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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGACAGGCTTATCAAAGAATTCCATCACTTTGAAGTGGGAAAGTGATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgcttttgtgccaactatggtagatatattaatgtcgaaaactcatccactcggtggagttttttttaaagaacttttttaagtttactttccagtgtaatagaagctaactgtggtgttagcaccttttttttttttgcagaaggcattcttaattgatttcctgtttatgatttgcatttgttctgcttactcag

Basic information

species Oryza sativa
transcript LOC_Os03g01750.5
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01750.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 9
CTGACAGGCTTATCAAAGAATTCCATCACTTTGAAGTGGGAAAGTGATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgcttttgtgccaactatggtagatatattaatgtcgaaaactcatccactcggtggagttttttttaaagaacttttttaagtttactttccagtgtaatagaagctaactgtggtgttagcaccttttttttttttgcagaaggcattcttaattgatttcctgtttatgatttgcatttgttctgcttactcag
|||||||| ||||| || ||  | ||||||||||||||||||  |||| ||| ||| |||||||||||||||||||| ||  | || ||||| ||||||   ||||   ||  |  | ||   | |         || |  |  |||    |  || |  |    | | |   ||| || |   || ||   | |  | ||||   |                                                                                         
CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttttccccttcagttgtgtgtttg--------gagattttttccttctgacggcgagtaagatcagggcatttattcaagctattt---aataaattagattat-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29656092|gb|CB652367.1|CB652367
EST:     TTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: TTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|88311093|gb|CI658006.1|CI658006
EST:     ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|58688312|gb|CK076999.1|CK076999
EST:     ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|2428616|gb|C73079.1|C73079
EST:     ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|29626840|gb|CB631851.1|CB631851
EST:     ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|58696174|gb|CK084861.1|CK084861
EST:     ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|58694687|gb|CK083374.1|CK083374
EST:     ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: ATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
EST: gi|29656147|gb|CB652422.1|CB652422
EST:     CTTGATGTCGGGTGGGGACAG                         ATAATTCCTTTGGCATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG
genomic: CTTGATGTCGGGTGGGGACAGgtatgctttt ... gcttactcagATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGG