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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATCCAATCGGTGTTTGCGTTATCTGATGGCTCTGGCTTAGCTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattgcgcaatagcagcatgtcaatggcgaaaattttcgtcaggaaggcaagtgtgatcaaggaaaacgaacccttttttaactccagttgcttgatcctgtaaacgctttacttttgtag

Basic information

species Oryza sativa
transcript LOC_Os02g57060.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57060.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G379002_T01 (Zea mays), 5'ss of exon 12
GAAGATCCAATCGGTGTTTGCGTTATCTGATGGCTCTGGCTTAGCTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattgcgcaatagcagcatgtcaatggcgaaaattttcgtcaggaaggcaagtgtgatcaaggaaaacgaacccttttttaactccagttgcttgatcctgtaaacgctttacttttgtag
|||||| || ||||| || |  ||||||||||| |||||||| ||||| ||||| || |||||||||||||| || ||||| ||||| |||||||| || | |  ||| |||||    | | |     | |||||       |  | ||  | ||||                   |||| ||     ||  |  |  ||| || |   || |||| |||
GAAGATTCAGTCGGTTTTCGGATTATCTGATGGATCTGGCTTGGCTGTTACCGTAGCACGCTATGAAACTCCTGCACATACCGACATTGACAAGgtaag-agtaagca-tagcaattggcctaaaaacagaattt-------ggtgccacttatgat-------------------tttagctgtttctgagtagt--tgtgaatga--tatttttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89189576|gb|CI049115.1|CI049115
EST:     CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|29679050|gb|CB675325.1|CB675325
EST:     CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|88473812|gb|CI411083.1|CI411083
EST:     CGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|86493848|gb|CI136481.1|CI136481
EST:     CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|88283032|gb|CI404478.1|CI404478
EST:     CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|88491804|gb|CI429076.1|CI429076
EST:     CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|29688368|gb|CB684643.1|CB684643
EST:     CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: CTGTGACCGTTGCGCGCTATGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
EST: gi|88481076|gb|CI418347.1|CI418347
EST:     TGAAACTCCCGCGCATACTGACATAGACAAG                         GTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA
genomic: TGAAACTCCCGCGCATACTGACATAGACAAGgtgagcattg ... acttttgtagGTCGGCGTGATCCCGGACCGCCCGCTGCCGGCGTCATTCCCCACGGATGAA